| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3955 |
|---|
| Symbol | |
|---|
| ID | 4457705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 4810947 |
|---|
| End bp | 4811876 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639704728 |
|---|
| Product | NADH ubiquinone oxidoreductase, 20 kDa subunit |
|---|
| Protein accession | YP_848059 |
|---|
| Protein GI | 116751372 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1941] Coenzyme F420-reducing hydrogenase, gamma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.650023 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTGA AAGTTGTGCA AGAATGGCTC AATTCCTGTT CGGGCTGCGA AATATCCATA
GTGGACATGG GCGAGCGGCT CCTGGACGTC CTGGCGCTCG TGGAGTTCGT ACACAGCCCG
GTACTCATGG ATCACAAGTA CTTCGGCCAG TTGGGCGACG GCAAACACCT GGAGATTCCC
GAGGCCGCCG TAGGGATTGT CAGCGGCGGC GTGCGCAACG AGGAACACCT GGAGATCATC
CGGCTGATGC GGCAGAAATG CCAGATCATC GTGGCCCTCG GCACCTGCGC CACACACGGT
GGAATCCCGG CTCTGTCCAA TTCATACAGC AACCAGGAGA CCCTCGAGCG CTATTACGGC
ACCGAATCCA CGGACCGGCC GGAGGAGTTC CCCAACCAGG GCGTTCCGAC CCTGCTCGAT
GCCTGCTCCG CTCTCGATGA ACAGGTCAAG GTCGACGTCT ACCTTCCCGG GTGCCCGCCG
CACCCGGACC ACGTTTTTGC CGCGCTGGTC GCACTGGTGG AAGGCAAACC GCTCGATCTT
CCCGGCAGGA GCGTGTGCGA TCACTGTCCC ACGGTGCGGG AAGGCAAAGG GCAGGTCAAA
CAACTCAGGC GATTCCTGCA GCCGCCCTAC CAGCAGAGCC CGGACGAGCC TCTGGACAAA
ATGCGCTGTA TTCTCGAACA AGGAATGCTG TGCATGGGAC CGGTGACAAG GGCCGGGTGC
GGGGGAGACG GCATCACCCC TCGCTGCCTT ACGGCCAGGG TTCCCTGCCG CGGATGCTAC
GGCCCGGTAA AGCAGGACGG CAATCAGCGG CTCGATATGC TGAATGCCCT TGCATCCAAC
GGCATCGACG TGGGTTCTTT GCCGGAAACC GTTTCCATGT TGAGATTCGC CGGGGCCCAT
CGGATGCTCC GGCCCGCGCG CAAAGCGTAG
|
|---|
| Protein sequence | MAVKVVQEWL NSCSGCEISI VDMGERLLDV LALVEFVHSP VLMDHKYFGQ LGDGKHLEIP
EAAVGIVSGG VRNEEHLEII RLMRQKCQII VALGTCATHG GIPALSNSYS NQETLERYYG
TESTDRPEEF PNQGVPTLLD ACSALDEQVK VDVYLPGCPP HPDHVFAALV ALVEGKPLDL
PGRSVCDHCP TVREGKGQVK QLRRFLQPPY QQSPDEPLDK MRCILEQGML CMGPVTRAGC
GGDGITPRCL TARVPCRGCY GPVKQDGNQR LDMLNALASN GIDVGSLPET VSMLRFAGAH
RMLRPARKA
|
|---|
| |