| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3950 |
|---|
| Symbol | |
|---|
| ID | 4457700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 4806402 |
|---|
| End bp | 4807178 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639704723 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_848054 |
|---|
| Protein GI | 116751367 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.358906 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGATCG GGAAGAGGAT GGTTGGATTG TGGACGTGCT TGTTTCTGCT GACGCTGCCC
GCCGTTGCTG CCGCGGATGA CTCCTGGAGC AAGGTTCAAC AGAGGGGTGA GCTGATTGTC
GGATTTTGTG CCCAGTACCC TCCTTTTGAA TCCAAGAATG AGAAGACGGC CGAATTCGAG
GGATTCGACG TCGACCTGGG AAAAGCCGTC GCCCGGCAAA TGGGAGTGAA GGTAAAATTC
GTGGACGCCG AGTGGCAGGG CCTCCTCGCG GGGCTGAAAA AGGGCGACTA CGACGTTCTG
ATCACTTGCA TGTCGAAATC CGAGGCCAGG AACGAAAACG TCAACATGAG CGACGTCTAT
TATACGCTGC CGGACGTGAT CGTTGTGCGG CAGGACGAGT CGGTCATAAG GGACAGGGAT
GGGCTCAAAG GGAAAATCGT CGGCGTGCAG CTTGGATCGG GGAGCGAGCA ACTGGCGGAC
AAAAACAGGG AGCTCTTCAA GGAAATCAAG CGTTACAACT ACAATCCCGA AGCCTTTACG
GATCTCAAGC ACAAGCGCAT CGATGCCGTG ATCGTCGGCT ATGCCTATGC GGTGAACCAG
ATCAAGACGG ACCCGTCGTA CAAGGTTGTG GGGAAGCCGT TGGCTGAAGC GGACATCGTG
ATCGTCGCGG CCAGGGGCGC CGACGCCCTG ACGGCCAGGA TCAATCAGTC TCTGAGCGCC
GTCAGGACTG AAGGGACCTA TCAAAAGATC CTCGATCAAT GGCTGAAGGT CGATTGA
|
|---|
| Protein sequence | MGIGKRMVGL WTCLFLLTLP AVAAADDSWS KVQQRGELIV GFCAQYPPFE SKNEKTAEFE
GFDVDLGKAV ARQMGVKVKF VDAEWQGLLA GLKKGDYDVL ITCMSKSEAR NENVNMSDVY
YTLPDVIVVR QDESVIRDRD GLKGKIVGVQ LGSGSEQLAD KNRELFKEIK RYNYNPEAFT
DLKHKRIDAV IVGYAYAVNQ IKTDPSYKVV GKPLAEADIV IVAARGADAL TARINQSLSA
VRTEGTYQKI LDQWLKVD
|
|---|
| |