Gene Sfum_3920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3920 
Symbol 
ID4457740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4773507 
End bp4774241 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content56% 
IMG OID639704693 
Productputative metal-dependent hydrolase 
Protein accessionYP_848024 
Protein GI116751337 
COG category[R] General function prediction only 
COG ID[COG2220] Predicted Zn-dependent hydrolases of the beta-lactamase fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.39883 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAAGG CGCTGACTCT GGTGTTGTTC CTCGTTGTGG CGGTCTTTCC CGATGCGGGC 
GCGCAGCAGG TGGAATCGGA CAGATTCGAG ACCGCCGCGG GTCCGCTGTC CGTTCAGTTT
CTCGGGCACG GCAGCCTTGC CTTCCAATTT GCCGACAAGG TCATCTATGT CGACCCCTAC
AGCGAAGTCG CCGAGTATTC CAAGCTGCCC AAAGCCGACA TCGTTTTCAT CACGCACGAA
CATAAGGACC ACTTCGATCC GAAGGCGCTG GGGCACATCG TTACGGACAA AACTCTGGTC
GTGTTGACCG AAACCTGCGG TCGGCAGTAC CAGGAAGGCC TGGTGATGCA CAATGGGGAT
CTGAAGACCA TTCAGGGCAT CACGGTGGAG GCGGTCCCGG CCTATAACAT CGTGCACTTG
AGGCCGTCCG GCTTCCCTTA TCACGCAAAA AGCTTCGGCA ACGGCTATGT GTTCACCTTC
GGCGAAAAGA GGGTTTACGT GGCCGGCGAC ACGGAAAACA TTCCGGAAAT GAAAGACCTG
AAGAATATCG ACATCGCCTT TCTGCCGATG AACCTGCCCT ATACCATGAC GCCCGAGATG
GTCGCCGACG CCGCCCGGAT CATCAGGCCC CGGATTCTTT ATCCCTATCA TTACGGTGAG
ACCGACGTCA CGCAGTTGAT CGGTTTGCTC AAGGATGAAA AGAGCATCGA GGTGCGCATC
CGGAATCTGA AGTGA
 
Protein sequence
MTKALTLVLF LVVAVFPDAG AQQVESDRFE TAAGPLSVQF LGHGSLAFQF ADKVIYVDPY 
SEVAEYSKLP KADIVFITHE HKDHFDPKAL GHIVTDKTLV VLTETCGRQY QEGLVMHNGD
LKTIQGITVE AVPAYNIVHL RPSGFPYHAK SFGNGYVFTF GEKRVYVAGD TENIPEMKDL
KNIDIAFLPM NLPYTMTPEM VADAARIIRP RILYPYHYGE TDVTQLIGLL KDEKSIEVRI
RNLK