| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3914 |
|---|
| Symbol | |
|---|
| ID | 4457769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 4767126 |
|---|
| End bp | 4768109 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639704687 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_848018 |
|---|
| Protein GI | 116751331 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.430325 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCC TGGTGACCGC GCGGCTGTCC GACGATGTGG TGTCGCTCAT CGAGCAGGAC
CATGAAGTTG AAATGAACCG GGAAAATCGA CCCATGGAGA GGGGTGCCCT GCTTGCCGGG
ATAGCGGGCA AACAGGGCGT TCTGTGCAGT ATTTCGGACC GTGTGGACGA GGAGTTCCTG
GCGCTCGCCC CGGGTCTCAA GATCATCGCG AACTTCGGAG TCGGGTTCGA TCATATCGAC
ATTGCCGCCG CTTCCAGGCG CGGGATTCCG GTGACCTACA CGCCGGGGGT TCTCACCGAC
GCGACGGCCG ATATTGCGTT TGCCTTGATT CTGGCGGTTT CGCGCCGGGT GGTCGAAGGG
GACCGAATGA CCAGGGAGGG GGGATTCAGG TTCTGGGCTC CGTTCCACTT CCTCGGGAGG
CAGGTGAGCG GGAAGACGCT GGGGATCGTC GGCATGGGGC GCATCGGGGA AGCGGTGGCC
AGGCGGGCGG CGGGATTCGA CATGAAGATC GTCTACCACG GCCGGAACAG GCTCGACCCG
GCCGACGAGC AGCGACTGCG GGCACGATAC CTGCCCTTGC ACGAGCTCCT GCGGGAAGCC
GACTTCGTGT CCCTTCACGT GCCCCTGACC ACCGAGACCC GCCATCTCAT CGGCCTCGAG
GAATTGCGGC TCATGAAGCC TTCGGCCGTC CTGATCAATA CGTCGCGCGG CCCGGTGGTG
AACGAGGCGG CCCTGGTCGA GGCGCTGCAG GAGGGGCGAA TCGGCGGGGC GGGCCTCGAC
GTCTACGAGA ACGAACCCGA ATTGGCGGCG GGACTCTCCG GGCTGGAAAA CGTGGTGCTC
CTTCCACACG TGGGGAGCGC CACCATCGAA ACGCGAACGA AAATGGCGCT CATGGCCGTG
GAAAACCTCC TGGTCGGACT GCGCGGCGAG CAGCCGCCGA ATTGCCTGAA CTGGTCCTCG
GTGATGGGCG TAAAAGGGAG ATGA
|
|---|
| Protein sequence | MKILVTARLS DDVVSLIEQD HEVEMNRENR PMERGALLAG IAGKQGVLCS ISDRVDEEFL
ALAPGLKIIA NFGVGFDHID IAAASRRGIP VTYTPGVLTD ATADIAFALI LAVSRRVVEG
DRMTREGGFR FWAPFHFLGR QVSGKTLGIV GMGRIGEAVA RRAAGFDMKI VYHGRNRLDP
ADEQRLRARY LPLHELLREA DFVSLHVPLT TETRHLIGLE ELRLMKPSAV LINTSRGPVV
NEAALVEALQ EGRIGGAGLD VYENEPELAA GLSGLENVVL LPHVGSATIE TRTKMALMAV
ENLLVGLRGE QPPNCLNWSS VMGVKGR
|
|---|
| |