| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3903 |
|---|
| Symbol | |
|---|
| ID | 4457758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 4753619 |
|---|
| End bp | 4754377 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639704676 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_848007 |
|---|
| Protein GI | 116751320 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.754855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.154621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGA AGGTTCTGGT CTGTCTGGTC TGCGCCCTGT CCATGCTGTT GTTTGGAAAT
GCGCCATCGG GCATGGCCCA GGAGAAAGTC TACGTCAACG GCATCGACGC CAACTTTCCG
CCTTTCGCCT TTGTGGATAA GACGGGCAAA CCCGACGGTT TCGACGTGGC CGCCCTCGAC
TGGATCGCCA AGGAGATGGG ATTCAAGGTC ACTCACAAGC CTATGGACTG GGACGGGATC
ATCCCCAGCC TCAATGCAAA GAAGATCGAC ATCATCGCCT CGGGCATGAG CATCACGGAA
GCGCGCAGGA AAGAGGTCAA TTTCACCGAG CCTTACTGGA AGATCACCCA GGTGCTGGTG
GCGAAGAAAG ACTCCGCCGC GACACCCGAG ACCGCCATGA AGGACGGGCA GAAGATCGGT
GTGCAGCGCG GAACGACCGA AGCCAAGTGG ATCGAGGAAA ACCTGATCAA GGCCCAGGGC
AAAAAATTCG AGCTGGTCTA CTACGATTCC GCTCCCCTGG CGGTTGAAGA CGTGGTCAAC
GGGCGCATCG TGGCCGCGGC CATGGATGAC GCTCCGGCCA AAGACGCCGA GAAGAAGAAG
CCCGTGAAAA TCATCGGCTC CTTCGGCATG CCCGACGAGA CGTTCGGTTA CGCGGTTCGC
AAGGAAGACA CGGAACTGCT GAAGAAACTC AATGAAGGTC TGAAGAAGCT CCAGGCTTCT
CCCGAGTGGG ATGTGCTGAG GAAGAAGTAC GAACTCTAG
|
|---|
| Protein sequence | MGKKVLVCLV CALSMLLFGN APSGMAQEKV YVNGIDANFP PFAFVDKTGK PDGFDVAALD
WIAKEMGFKV THKPMDWDGI IPSLNAKKID IIASGMSITE ARRKEVNFTE PYWKITQVLV
AKKDSAATPE TAMKDGQKIG VQRGTTEAKW IEENLIKAQG KKFELVYYDS APLAVEDVVN
GRIVAAAMDD APAKDAEKKK PVKIIGSFGM PDETFGYAVR KEDTELLKKL NEGLKKLQAS
PEWDVLRKKY EL
|
|---|
| |