Gene Sfum_3877 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3877 
Symbol 
ID4457802 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4730952 
End bp4731578 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content58% 
IMG OID639704650 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_847981 
Protein GI116751294 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0377952 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGACC AGGATCAATC CAATCCGGCG CAGGGCGGCA CCGATGACGT CGCGCTGCTC 
GCGGAAAGAG CTCGGGACGG GGACGCGGCG GCCTTCGGTC GCCTGGTGGA TCTGTTCCAG
GATGAGATTT TCCGGATGGT CTATTATCGG ACCCGGTCGC GCCCGGACGC GGAGGATTTG
ACGCAGGACG TGTTTCTTCA GGCCTTCAAG AACCTGGGCA AGCTCAAGGA CTTCGACCGG
TTCCGGGCCT GGCTGTACAG CATTGCGGTG AACCGGGTGC GTGACTTCTA TCGAAAGAAG
CGATTGCTCT CGTTCTTTGG TCTGATGGGT GAAGAAGGAA GTTCCGAAGC TCCCGAGGAC
AGGCCCGATC ACGGTCCCGG AGCGTTGGAG CAGCTTGTGA GAGAGGAATT CTGGGTGAGG
GTGAGGCAAT TGTCGGAGAC ATTTTCAGGC GCGGAGCGCG AGGTTTTTTT TCTGAGATTC
CTCGACAATC TCAGCATCAA GGAGATATCC CATACTCTCC ACAAGAGCGA GAGCGCGGTC
AAAACCCATC TGTACCGGGC GCTCCAGAAG TTCAGGGATC ACTCGGAGGC GGGTGAATTT
CTGGAAGGGG ATAGGACATG TCCGTGA
 
Protein sequence
MSDQDQSNPA QGGTDDVALL AERARDGDAA AFGRLVDLFQ DEIFRMVYYR TRSRPDAEDL 
TQDVFLQAFK NLGKLKDFDR FRAWLYSIAV NRVRDFYRKK RLLSFFGLMG EEGSSEAPED
RPDHGPGALE QLVREEFWVR VRQLSETFSG AEREVFFLRF LDNLSIKEIS HTLHKSESAV
KTHLYRALQK FRDHSEAGEF LEGDRTCP