| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3741 |
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| Symbol | |
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| ID | 4457941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 4566384 |
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| End bp | 4570190 |
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| Gene Length | 3807 bp |
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| Protein Length | 1268 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639704514 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_847846 |
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| Protein GI | 116751159 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACGAC ATGAAGGCTC ATGCCTGGGG AGTCTGCGCT TCAAAATCGC CTTTCCTTTT
ACCGCCCTGG TGGTGATCGC CCTGCTGTTG CTGGGAATTG TCGCGGTAGA GCGGGGAATG
AAGACGCTGA CGGAAAGGGC CAAGGAATCA CAGTCCATCC TCGCGCATGC CTTGGCCGAC
ACGCTGGGAA ACCTGCTCAA GGACAAATTG TCGCTGTTGG AAGGTATCGT CCAGCTTCGT
TCGGTCAAAC AAATGGACCC CGCCTGGATG GATCAGGAGA TCGGTACCGC CCGAACGATG
GAGCGAGGGG TAACCTCTTT TATCGTCCTG GATCATAACG GCACGGTCGT CTCCTTCGTG
GACCACCCCG AACACGTGGG CAAGAGCCTG GCCATGAGGG AGTACTTTCA GGTGGCACGC
AACGAGGGAC GCCGTTTCTT CTCCGACAGC ATTCTGACCC TGGATAAGAC CATCACTGTG
GCGGTTTCGA TGCCCATCGT CGACCAACTC GGAGAGAGGG TTGGGGTCTT GGTCGCCACC
TTCGACGTTC ACCATGAGAA CTTCAATCAA GTGATCCATG ATGCCGAAAT CGGCTCTCGT
GGCCATGCCT TTCTGGTAGA CCGCCAGGGG ATTGTGATCT CTCACCCGGA GACGAGGCGT
TCCCTGGAAC AGCAGAATTT CAGCCAATAT GCACCGGTTC GCGAGACCAT GAGCCTGAAA
AGCGGGGTGG TCACCTATGA CTTCGAGGGC ATCGCGATGC TCGCGGCCTT CACTCCCGTC
ACCCCGAGCG GCTGGGGGGT GGTGGTGCAA CAACCACTGG CCGATGCCAA CGCCCCCGCG
ATGCACCTGA GAAATATCAT TATGGCCGTG ATGCTCTTCA GCGCGATAGC CGCCGCGCTC
ATGGGGCTCC TGGTCAGCAC CCGCATCACC GCTCCCTTGT CCCGGCTCGA GGCGGTCGCC
CGCACCATTG GCGCCGGCAA TCTGGAAGAG CCGGTGCCAG GCATCCGGGG AGGGGAAATC
GGCACCCTGG CCCGGACCCT TGAAGCCATG CGTCTCAGCC TGAAGGATTC CGCGGTTCAA
AGGACACAGG CTTATGAAGC CCTGCAGGCG AGCGAAGAGC GGTACCGCAG AATCATTGAG
ACGACCGAGG AAGGCATCTG GCTCACAGAC CGTCAGTGGA AGACCAGTTA TGTCAACTCC
CGGCTCGAGC GGATGCTTGG GTACGAGCCC GGTGAAATGC TGGGACGGCA CATCGAGGAG
TTCATGGATG ATGAAGGACG GCTGCTTGCC CGGGAAAAGA TGGCCGGGCG GGAAAGCGGG
ATGCCGGGGA CTTACGAGTT CAAGCTCGTC CGGCGGGATG GTTCCGAACT GTGGGCCATG
GTCTCGACAA GTCCTGTTGT GAGTGCGTCC GGACAGTTTG AGGGCGCTCT GGCGATGCTG
ACCGACATCA CCCAGCACAA GCAGGCGGAA GAGGAACTGA AAGAGCGTGA CGACCGGTTC
AAGAAACTCT CCTCCCACGT TCCCGGAATG ATCTATCAGT TTAAGAGAAG GCCGGACGGC
ACCTATTGCG TCCCGTTCAC CACGGACGCC GTAAGGGAAA TTTTTGGCTG CACTCCGGAA
GCGGTGCGTG AGGACTACTC TCCCATAGCC GGCGTGATCT CGGCCGAGGA TTGGGGTGGC
GTGATCCGTT CCATTGGAGA GTCTGCCGCA TCGATGACGA TTTGGCAATG TACCTTTCGA
GTACAGGTTC CCGGCCGGCC CGTCCGATGG ATGCTGGGGA ATTCGACGCC CGAGCGATTG
GATGACGGAA GTATCGTCTG GCATGGATTC ATCACCGACG TCACTGAGCG GAAGCAGGCA
GGGGAGGCAT TGATCCGGAG CGAAGAGAGG TACGGGAGGC TGTTCGAGGA TGCCGTGCTC
GGGATCTTCC GATCCACGCC GACGGGCAGT CTTGTCGATG CCAACCCGGC TCTCGCCGTC
ATGTTCGGTT TTGAATCGCC TGCACAGATG AAAGATTCTG TGGGCAATCT CGCCGGCGTT
TACGATGATC CCGCCCGCAG GAAGGAGATC GTCCAGAGAC TCCTTGAGAC CCGGAAGCCC
GTCCGGACGG AAGGCCGCTT TCTGCGCCGG GATGGAACGT CCTTCATCGG CAACATTCAT
CTCTGGACGG TGCGGGACGA ACACGACAAT ATCCTCCACA TAGAGGGTTT CGTTGAAGAC
ATCACCGAAC GGAAGCTGGC GGAGGAAGCA ATCGAGCAGC TCAGGCGTCA AAACGAACTC
ATCTTGAACT CGGTCGGAGA AGGCATCCTG GGGCTGGACG TGGAAGGGAG GCACACCTTT
GTCAACTCCG CCGCCATGGG AATGCTGGGA TTCGAGCCCG CCGAGCTCAT CGGTCGGCGG
GGCCACGACA TGTACCATCA CACCAGGGAG AGCGGAGACC GTTTTCCTGA AGAAGAGTGC
CCAATCTATC AAAGCTATCG GAGCGGCAGA GCCTGTTCGC TCACGCAAGC CACGTTCTGG
CGGAAAGACG GCTCAAGTTT CCCGGTGAGG TACAGCTGCG CCCCTCTTAT CGAGGGCGGG
AAGGTGCTGG GAGCGGTTGT GGCGTTTCGT GACATCACGA GACAGCGGCA GATTGAAGAG
GAGAAGGACA GACTGACGGC TCAACTGGCA CAGGCCCAAA AAATGGAGGC CATCGGCACC
CTTGCTGGAG GAATCGCCCA TGATTTCAAC AATATCCTTG GGATCATCAT GGGGTACGCC
GAGATCGCCA ACCTCGATCT TCCTTTCGAC TCCAGCGCCA AAGAGAGTAT CGCCGAGGTG
TTGAAGGCTA CGCGCAGGGC CAGGGGTCTG ACGGCGCAAA TCCTCACCTT CAGCCGCAAG
CACGTTCAGG AGAAGAGGCC GCTGCGCACT GTCCCGGTTG TCAAGGAAGC TTTGAAACTG
CTTCGAGCAA CTCTGCCGAC AACCGTTGAA ATTCGCGGGG AGATCGATCT CCCGGAGGGT
GAGGACCTGA CTTTGGGAGA TCCCACTCAG ATCCACCAGA TCCTGATGAA CCTGTCGACC
AATGCCGCTC ACGCCATGCG GGAGCATGGA GGCATTCTGT CCGTGTTCCT GACCCAAGTG
GCGTTCGACC CGGCGAACGA TGCCGGCGTC ATGGGTCTCA GCCCGGGGCG GTATCTCAGG
CTTACGGTTC AGGATACCGG GCATGGGATG GACCGCACCG TCCTCGATCG CATTTTCGAT
CCCTATTTCA CGACCAAAGG CTCCGGTGAA GGGACCGGTC TCGGGTTGGC CGTGGTTCAC
GGCATTGTCA AGAACTGCAA CGGCGCGATT ACCGTCCACA GCAAGCCGGG GGCAGGAACC
GTGTTCCACG TGCACCTGCC GAAGCTGGAA AGAGAAGCAT CATCCATCGA GGTGGCCCCT
GTCTCGATCG CTACGGGAAG TGAGAGCGTC ATCGTGGTGG ATGATGAAGA AAAACTGGTT
ATCGCCATCA AGCGCATGCT GGAATATCTC GGATACAAGG TTACCGCGAT GACAAGCAGT
GTCGCCACGC TCTCCCTGTT TCGGCAACAA CCGGAGGGGT TCGACGTGAT GATCACTGAC
TACACCATGC CCGGCATGAC GGGGATCGAT CTTGCCAGAG AGATCATAGG GATCCGGCCC
GACTTCCCCA TTATTCTCTG TACAGGCTTC AGTGAAGAGA TCTCGGAAGA TGCCGTCAAC
AGTATCGGTA TCAGGGCCTT GCTGATGAAG CCGGTCACCC TCCAGCGCCT TGCCGGGACG
GTCCGGAGGG TCCTGGAGAT CGCATAG
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| Protein sequence | MGRHEGSCLG SLRFKIAFPF TALVVIALLL LGIVAVERGM KTLTERAKES QSILAHALAD
TLGNLLKDKL SLLEGIVQLR SVKQMDPAWM DQEIGTARTM ERGVTSFIVL DHNGTVVSFV
DHPEHVGKSL AMREYFQVAR NEGRRFFSDS ILTLDKTITV AVSMPIVDQL GERVGVLVAT
FDVHHENFNQ VIHDAEIGSR GHAFLVDRQG IVISHPETRR SLEQQNFSQY APVRETMSLK
SGVVTYDFEG IAMLAAFTPV TPSGWGVVVQ QPLADANAPA MHLRNIIMAV MLFSAIAAAL
MGLLVSTRIT APLSRLEAVA RTIGAGNLEE PVPGIRGGEI GTLARTLEAM RLSLKDSAVQ
RTQAYEALQA SEERYRRIIE TTEEGIWLTD RQWKTSYVNS RLERMLGYEP GEMLGRHIEE
FMDDEGRLLA REKMAGRESG MPGTYEFKLV RRDGSELWAM VSTSPVVSAS GQFEGALAML
TDITQHKQAE EELKERDDRF KKLSSHVPGM IYQFKRRPDG TYCVPFTTDA VREIFGCTPE
AVREDYSPIA GVISAEDWGG VIRSIGESAA SMTIWQCTFR VQVPGRPVRW MLGNSTPERL
DDGSIVWHGF ITDVTERKQA GEALIRSEER YGRLFEDAVL GIFRSTPTGS LVDANPALAV
MFGFESPAQM KDSVGNLAGV YDDPARRKEI VQRLLETRKP VRTEGRFLRR DGTSFIGNIH
LWTVRDEHDN ILHIEGFVED ITERKLAEEA IEQLRRQNEL ILNSVGEGIL GLDVEGRHTF
VNSAAMGMLG FEPAELIGRR GHDMYHHTRE SGDRFPEEEC PIYQSYRSGR ACSLTQATFW
RKDGSSFPVR YSCAPLIEGG KVLGAVVAFR DITRQRQIEE EKDRLTAQLA QAQKMEAIGT
LAGGIAHDFN NILGIIMGYA EIANLDLPFD SSAKESIAEV LKATRRARGL TAQILTFSRK
HVQEKRPLRT VPVVKEALKL LRATLPTTVE IRGEIDLPEG EDLTLGDPTQ IHQILMNLST
NAAHAMREHG GILSVFLTQV AFDPANDAGV MGLSPGRYLR LTVQDTGHGM DRTVLDRIFD
PYFTTKGSGE GTGLGLAVVH GIVKNCNGAI TVHSKPGAGT VFHVHLPKLE REASSIEVAP
VSIATGSESV IVVDDEEKLV IAIKRMLEYL GYKVTAMTSS VATLSLFRQQ PEGFDVMITD
YTMPGMTGID LAREIIGIRP DFPIILCTGF SEEISEDAVN SIGIRALLMK PVTLQRLAGT
VRRVLEIA
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