Gene Sfum_3740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3740 
Symbol 
ID4457940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4562829 
End bp4566158 
Gene Length3330 bp 
Protein Length1109 aa 
Translation table11 
GC content58% 
IMG OID639704513 
Productputative PAS/PAC sensor protein 
Protein accessionYP_847845 
Protein GI116751158 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCAGACCC GCATCGGCGA GGAGCTTCAG GCAAATCTTG AGGTTGCGCG GGCAACCGCC 
AGGAATTTCG AATCGTTCGT GCGGGATGTC GTCCACAGCG AACTCGTCCT CGGGCTGGCG
CTCACGGTCT CTCCGCCCAT GTCGGAAGCG GATCAACGTC GCCTGGTCGA GGAATTTAAC
GCGGATAATC CCGCCGTGTG GCGCGTTCAC TGGATCAACC CGGACGGCCA GGTGATTGCG
CCCAGTCCCG AAGACGTCAT CGGCATGGAT GTGAGCGATC GCCTGTTTTT CAAAAAGATC
AAGAGCGGGC GGGAGTGGTT CGTCAGCGAG GTTTTTTCCG GAAAGGTCAC GGGCCGGCAA
CTGTTCGTCA TCAGCCGCGC AATTCGCTCG GAACATGGCG AACTGGCAGG GATTGTGGCA
GCTGCCGTCC AACCGGCCGA CCTGGACTGG GTCATGGCCA TCAAGCGCCA TCAGGATGCG
GGCGTGAGCC TGGTGGACAG CAGGGGCATG CACGCGTATC GTTTCCCACC CATAAACTAT
ACCCCGGAAC AACGCGACTG GCTCAAGAGC TATCCCGCCA TCAAAGAGGC TCTCGCCGGG
AATGAAATCG CCACCGTCGT TACCTCCGTT TTAACCGGCA AAGAGCGCCT GGTCGCCTTC
GTCCCCGTTT TGGGCACTGG CTGGGTGGCG TCCGCGAGTC GCCTCCAGGA AGACGCCATG
GTTGCCATCA ATTCTGATCT GAGACACCAC AACCTGCTTT TTGCAGGTCT CATCCTGGTG
GTTTTTTGCG CGGTACTGTT CTTCTCGCGC TACATTGCCG CTCCCATCAA ACGACTTCGC
GATCAGGTAC TTCGCCAGGG TCCCGGAGAA TCGTGGGACT TCAAGGTCGA TACCGGCCCC
ACCGAGGTTA TCGAGCTTGC CTCGGCCTTC CGGATCATGT CCGAGAGGAT CAAAGCCCGC
GAATGGGAGC TCGGCAAGAG TGAAGAAAAA TTCCGCATCC TCTTTCATTC CATTCCCGAG
CCTTTGGCCC TGGCTATCGG CGACGATGCC GCCGTAGTCG ATGTGAATGA GTCCTTCTGC
CGGTTTTTGG GTCTCTCCCG TGCTGAGATT GAAGGCCGGC CCTTCATGGT TCTCGACATC
TGGCACGACC TGGAGGATCG CGACCAAATC CAGAATCTGC AGACGGCCGG CACCGAGGTC
CAGGACCTCG AATGCCGTCT GCGAACGCAA TCCGGCGCCG CGAAATACGT CCTGCTCTCT
ACGGCGAAGG TCGAAACGCA GACGCAGAAG GGCAGGCTCT TTATTCTGAA GGACATCACC
GCGCGCAAGG CCGCGGAGAT GGCCCTCCAG GGGCAGAGCA CAACACTGCA GACGATTTTC
GACGCCGTGC CGGCCTTGAT CTTTTATAAG GACTTGGAAA ACCGCCTGAT GCGCGCCAAT
CAATTGTGGT TCGAAACCTT TGGTCTGAGC GAAGCAGCCG TGATCGGCAA ATCCCTGGAC
GAATTCTTGC TGAAAGCGGA TGCGGAAAGG TTCTACCGCG ACGACCTGGA GGTCATCGCT
TCAAACCGGG CCAAGAAGGA TATCCTCGGG GAGATTCAGG TCAATGGCAA GACATTGTGG
CTCAAAACCC AGAAGATACC TTATCGGGAC AGCGCGGGTC GGGTGGTCGG CATCATCGGC
TTTTCCGAGA ACATCACCGC CGGCAAGCGA GCGGAGGATG AGCTGCTGGA GTCCCGACAG
CGGTTGTCGG ATATCATCGA TTTTCTGCCG GATGCCACCT TTGTGATGGA TGAGGAGGGG
ACAGTCATCG CCTGGAACCG GGCCATCGAG GAGATGACGG GGGTCAAGGC TTCGGAAATG
TTGGGTCGAG GCAACTACGA ATACTCTTTG CCCTTTTACG GTGTGAGGCG ACCTATCCTG
ATCGACCTGG TTCTCGATCA CGGATGCGAG TTTGCAGGCG AGTACCAGGG CATGACAATA
AAAGAATCGA TGCTCGAGGC GGAAGCATTT GTGCCAAGCC TGAAGGGGGA AAGAGCCTGT
CTTTACGGCA AAGCCAGCGT CCTGCGCAAT TCGAAGGGAA AGATCGTGGG GGCCATCGAA
TCAATCCGGG ATATCACCGA GCGCAAACGG GCGGAGGAGG AGAGGGAGCT TCTTGAGCTG
CAGTTGCGGC AAGTGCACAA GACCGAAGCC ATTGGTACTC TTGCCGGTGG CATTGCCCAC
GACTTCAACA ACATTCTCGG AATCATCATG GGTTATGCCG AACTCGCCAG GATGGAGTTC
CCAAGGGAAA CCACCGCGCG GGAGAGTATC GATGAGGTGC TGAAGGCAAC GCATCGAGCC
AAGGAACTGG TCAGACAGAT CCTTGACTTC AGTCGAACGC GCGAATACGA ACGGAAACCC
CTGCGACTGG TTCCGGTGGT CAAGGAAGTG CTGAAGCTCC TCAGAGCTTC CCTGCCGTCG
TCCATTGAAA TGGATCAGGC CGAAGAATTG CCGGCAGTTG GGGATCTGGT CCTGGCCGAT
CCCACTCAGA TCCACCAGGT GCTGATGAAT CTGGCGACCA ATGCGGCTCA CGCCATGCGC
GGGAAGGAGG GAAGGCTGCG CGTGGCGCTT TCCCCCGTTT CTTTTGACTC GCTTGATCCA
ACCAGACCGG TTGAGCTCAG CCCGGGAAAA TACCTTGACC TTGCGGTTGA AGATACCGGA
CATGGCATGA GCCAGGATAT CCTCGAACGG ATCTTCGATC CTTATTTCAC CACCAAGAAG
GCGGGCGAGG GAACCGGACT GGGATTGTCG GTGGCGCACG GGATTGTCAA GAACCATGGC
GGAGCAATCC GGGTCTTCTC CGAGCCTGGC CAAGGAACGG TCGTTCATGT GTATCTCCCG
GTGCTGGAGA GCGTGGAGCC GGTGGAACCA CCGGCACCCT CATCGACCCT TCCCGGGGGA
AACGAACGCA TCCTGCTCGT CGATGATGAA GAAGCCCTGG CCAAGGCCCT CAAGAAGAGG
CTCGAACGCC TGGGCTACCA GGTGACGGCA GTCACGGGCA GTCCGGAGGC CCTCGAAATC
TTCGGCGGGC AGCCGGAAGC CTTCGACCTG ATAATCACCG ATTACACCAT GCCGAAAATG
ACCGGGACGG AACTCGCCCG AGAGATCCTG AAGATCCGCT CCAGCATTCC CATCATCCTT
TCCACCGGTT TCAGCGAACG GCTCGATGAA GAAGAAACGG CGGCAGCGGG CATCAGCGCT
TTGATTATGA AACCGGTGAG TCTGAAGGGA ATCGCCGAGC TCATTTCGAC GGTGAGGAAG
GATCACGACA CCGGCTTCCT TTCCCCGTGA
 
Protein sequence
MQTRIGEELQ ANLEVARATA RNFESFVRDV VHSELVLGLA LTVSPPMSEA DQRRLVEEFN 
ADNPAVWRVH WINPDGQVIA PSPEDVIGMD VSDRLFFKKI KSGREWFVSE VFSGKVTGRQ
LFVISRAIRS EHGELAGIVA AAVQPADLDW VMAIKRHQDA GVSLVDSRGM HAYRFPPINY
TPEQRDWLKS YPAIKEALAG NEIATVVTSV LTGKERLVAF VPVLGTGWVA SASRLQEDAM
VAINSDLRHH NLLFAGLILV VFCAVLFFSR YIAAPIKRLR DQVLRQGPGE SWDFKVDTGP
TEVIELASAF RIMSERIKAR EWELGKSEEK FRILFHSIPE PLALAIGDDA AVVDVNESFC
RFLGLSRAEI EGRPFMVLDI WHDLEDRDQI QNLQTAGTEV QDLECRLRTQ SGAAKYVLLS
TAKVETQTQK GRLFILKDIT ARKAAEMALQ GQSTTLQTIF DAVPALIFYK DLENRLMRAN
QLWFETFGLS EAAVIGKSLD EFLLKADAER FYRDDLEVIA SNRAKKDILG EIQVNGKTLW
LKTQKIPYRD SAGRVVGIIG FSENITAGKR AEDELLESRQ RLSDIIDFLP DATFVMDEEG
TVIAWNRAIE EMTGVKASEM LGRGNYEYSL PFYGVRRPIL IDLVLDHGCE FAGEYQGMTI
KESMLEAEAF VPSLKGERAC LYGKASVLRN SKGKIVGAIE SIRDITERKR AEEERELLEL
QLRQVHKTEA IGTLAGGIAH DFNNILGIIM GYAELARMEF PRETTARESI DEVLKATHRA
KELVRQILDF SRTREYERKP LRLVPVVKEV LKLLRASLPS SIEMDQAEEL PAVGDLVLAD
PTQIHQVLMN LATNAAHAMR GKEGRLRVAL SPVSFDSLDP TRPVELSPGK YLDLAVEDTG
HGMSQDILER IFDPYFTTKK AGEGTGLGLS VAHGIVKNHG GAIRVFSEPG QGTVVHVYLP
VLESVEPVEP PAPSSTLPGG NERILLVDDE EALAKALKKR LERLGYQVTA VTGSPEALEI
FGGQPEAFDL IITDYTMPKM TGTELAREIL KIRSSIPIIL STGFSERLDE EETAAAGISA
LIMKPVSLKG IAELISTVRK DHDTGFLSP