Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3740 |
Symbol | |
ID | 4457940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 4562829 |
End bp | 4566158 |
Gene Length | 3330 bp |
Protein Length | 1109 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639704513 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_847845 |
Protein GI | 116751158 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCAGACCC GCATCGGCGA GGAGCTTCAG GCAAATCTTG AGGTTGCGCG GGCAACCGCC AGGAATTTCG AATCGTTCGT GCGGGATGTC GTCCACAGCG AACTCGTCCT CGGGCTGGCG CTCACGGTCT CTCCGCCCAT GTCGGAAGCG GATCAACGTC GCCTGGTCGA GGAATTTAAC GCGGATAATC CCGCCGTGTG GCGCGTTCAC TGGATCAACC CGGACGGCCA GGTGATTGCG CCCAGTCCCG AAGACGTCAT CGGCATGGAT GTGAGCGATC GCCTGTTTTT CAAAAAGATC AAGAGCGGGC GGGAGTGGTT CGTCAGCGAG GTTTTTTCCG GAAAGGTCAC GGGCCGGCAA CTGTTCGTCA TCAGCCGCGC AATTCGCTCG GAACATGGCG AACTGGCAGG GATTGTGGCA GCTGCCGTCC AACCGGCCGA CCTGGACTGG GTCATGGCCA TCAAGCGCCA TCAGGATGCG GGCGTGAGCC TGGTGGACAG CAGGGGCATG CACGCGTATC GTTTCCCACC CATAAACTAT ACCCCGGAAC AACGCGACTG GCTCAAGAGC TATCCCGCCA TCAAAGAGGC TCTCGCCGGG AATGAAATCG CCACCGTCGT TACCTCCGTT TTAACCGGCA AAGAGCGCCT GGTCGCCTTC GTCCCCGTTT TGGGCACTGG CTGGGTGGCG TCCGCGAGTC GCCTCCAGGA AGACGCCATG GTTGCCATCA ATTCTGATCT GAGACACCAC AACCTGCTTT TTGCAGGTCT CATCCTGGTG GTTTTTTGCG CGGTACTGTT CTTCTCGCGC TACATTGCCG CTCCCATCAA ACGACTTCGC GATCAGGTAC TTCGCCAGGG TCCCGGAGAA TCGTGGGACT TCAAGGTCGA TACCGGCCCC ACCGAGGTTA TCGAGCTTGC CTCGGCCTTC CGGATCATGT CCGAGAGGAT CAAAGCCCGC GAATGGGAGC TCGGCAAGAG TGAAGAAAAA TTCCGCATCC TCTTTCATTC CATTCCCGAG CCTTTGGCCC TGGCTATCGG CGACGATGCC GCCGTAGTCG ATGTGAATGA GTCCTTCTGC CGGTTTTTGG GTCTCTCCCG TGCTGAGATT GAAGGCCGGC CCTTCATGGT TCTCGACATC TGGCACGACC TGGAGGATCG CGACCAAATC CAGAATCTGC AGACGGCCGG CACCGAGGTC CAGGACCTCG AATGCCGTCT GCGAACGCAA TCCGGCGCCG CGAAATACGT CCTGCTCTCT ACGGCGAAGG TCGAAACGCA GACGCAGAAG GGCAGGCTCT TTATTCTGAA GGACATCACC GCGCGCAAGG CCGCGGAGAT GGCCCTCCAG GGGCAGAGCA CAACACTGCA GACGATTTTC GACGCCGTGC CGGCCTTGAT CTTTTATAAG GACTTGGAAA ACCGCCTGAT GCGCGCCAAT CAATTGTGGT TCGAAACCTT TGGTCTGAGC GAAGCAGCCG TGATCGGCAA ATCCCTGGAC GAATTCTTGC TGAAAGCGGA TGCGGAAAGG TTCTACCGCG ACGACCTGGA GGTCATCGCT TCAAACCGGG CCAAGAAGGA TATCCTCGGG GAGATTCAGG TCAATGGCAA GACATTGTGG CTCAAAACCC AGAAGATACC TTATCGGGAC AGCGCGGGTC GGGTGGTCGG CATCATCGGC TTTTCCGAGA ACATCACCGC CGGCAAGCGA GCGGAGGATG AGCTGCTGGA GTCCCGACAG CGGTTGTCGG ATATCATCGA TTTTCTGCCG GATGCCACCT TTGTGATGGA TGAGGAGGGG ACAGTCATCG CCTGGAACCG GGCCATCGAG GAGATGACGG GGGTCAAGGC TTCGGAAATG TTGGGTCGAG GCAACTACGA ATACTCTTTG CCCTTTTACG GTGTGAGGCG ACCTATCCTG ATCGACCTGG TTCTCGATCA CGGATGCGAG TTTGCAGGCG AGTACCAGGG CATGACAATA AAAGAATCGA TGCTCGAGGC GGAAGCATTT GTGCCAAGCC TGAAGGGGGA AAGAGCCTGT CTTTACGGCA AAGCCAGCGT CCTGCGCAAT TCGAAGGGAA AGATCGTGGG GGCCATCGAA TCAATCCGGG ATATCACCGA GCGCAAACGG GCGGAGGAGG AGAGGGAGCT TCTTGAGCTG CAGTTGCGGC AAGTGCACAA GACCGAAGCC ATTGGTACTC TTGCCGGTGG CATTGCCCAC GACTTCAACA ACATTCTCGG AATCATCATG GGTTATGCCG AACTCGCCAG GATGGAGTTC CCAAGGGAAA CCACCGCGCG GGAGAGTATC GATGAGGTGC TGAAGGCAAC GCATCGAGCC AAGGAACTGG TCAGACAGAT CCTTGACTTC AGTCGAACGC GCGAATACGA ACGGAAACCC CTGCGACTGG TTCCGGTGGT CAAGGAAGTG CTGAAGCTCC TCAGAGCTTC CCTGCCGTCG TCCATTGAAA TGGATCAGGC CGAAGAATTG CCGGCAGTTG GGGATCTGGT CCTGGCCGAT CCCACTCAGA TCCACCAGGT GCTGATGAAT CTGGCGACCA ATGCGGCTCA CGCCATGCGC GGGAAGGAGG GAAGGCTGCG CGTGGCGCTT TCCCCCGTTT CTTTTGACTC GCTTGATCCA ACCAGACCGG TTGAGCTCAG CCCGGGAAAA TACCTTGACC TTGCGGTTGA AGATACCGGA CATGGCATGA GCCAGGATAT CCTCGAACGG ATCTTCGATC CTTATTTCAC CACCAAGAAG GCGGGCGAGG GAACCGGACT GGGATTGTCG GTGGCGCACG GGATTGTCAA GAACCATGGC GGAGCAATCC GGGTCTTCTC CGAGCCTGGC CAAGGAACGG TCGTTCATGT GTATCTCCCG GTGCTGGAGA GCGTGGAGCC GGTGGAACCA CCGGCACCCT CATCGACCCT TCCCGGGGGA AACGAACGCA TCCTGCTCGT CGATGATGAA GAAGCCCTGG CCAAGGCCCT CAAGAAGAGG CTCGAACGCC TGGGCTACCA GGTGACGGCA GTCACGGGCA GTCCGGAGGC CCTCGAAATC TTCGGCGGGC AGCCGGAAGC CTTCGACCTG ATAATCACCG ATTACACCAT GCCGAAAATG ACCGGGACGG AACTCGCCCG AGAGATCCTG AAGATCCGCT CCAGCATTCC CATCATCCTT TCCACCGGTT TCAGCGAACG GCTCGATGAA GAAGAAACGG CGGCAGCGGG CATCAGCGCT TTGATTATGA AACCGGTGAG TCTGAAGGGA ATCGCCGAGC TCATTTCGAC GGTGAGGAAG GATCACGACA CCGGCTTCCT TTCCCCGTGA
|
Protein sequence | MQTRIGEELQ ANLEVARATA RNFESFVRDV VHSELVLGLA LTVSPPMSEA DQRRLVEEFN ADNPAVWRVH WINPDGQVIA PSPEDVIGMD VSDRLFFKKI KSGREWFVSE VFSGKVTGRQ LFVISRAIRS EHGELAGIVA AAVQPADLDW VMAIKRHQDA GVSLVDSRGM HAYRFPPINY TPEQRDWLKS YPAIKEALAG NEIATVVTSV LTGKERLVAF VPVLGTGWVA SASRLQEDAM VAINSDLRHH NLLFAGLILV VFCAVLFFSR YIAAPIKRLR DQVLRQGPGE SWDFKVDTGP TEVIELASAF RIMSERIKAR EWELGKSEEK FRILFHSIPE PLALAIGDDA AVVDVNESFC RFLGLSRAEI EGRPFMVLDI WHDLEDRDQI QNLQTAGTEV QDLECRLRTQ SGAAKYVLLS TAKVETQTQK GRLFILKDIT ARKAAEMALQ GQSTTLQTIF DAVPALIFYK DLENRLMRAN QLWFETFGLS EAAVIGKSLD EFLLKADAER FYRDDLEVIA SNRAKKDILG EIQVNGKTLW LKTQKIPYRD SAGRVVGIIG FSENITAGKR AEDELLESRQ RLSDIIDFLP DATFVMDEEG TVIAWNRAIE EMTGVKASEM LGRGNYEYSL PFYGVRRPIL IDLVLDHGCE FAGEYQGMTI KESMLEAEAF VPSLKGERAC LYGKASVLRN SKGKIVGAIE SIRDITERKR AEEERELLEL QLRQVHKTEA IGTLAGGIAH DFNNILGIIM GYAELARMEF PRETTARESI DEVLKATHRA KELVRQILDF SRTREYERKP LRLVPVVKEV LKLLRASLPS SIEMDQAEEL PAVGDLVLAD PTQIHQVLMN LATNAAHAMR GKEGRLRVAL SPVSFDSLDP TRPVELSPGK YLDLAVEDTG HGMSQDILER IFDPYFTTKK AGEGTGLGLS VAHGIVKNHG GAIRVFSEPG QGTVVHVYLP VLESVEPVEP PAPSSTLPGG NERILLVDDE EALAKALKKR LERLGYQVTA VTGSPEALEI FGGQPEAFDL IITDYTMPKM TGTELAREIL KIRSSIPIIL STGFSERLDE EETAAAGISA LIMKPVSLKG IAELISTVRK DHDTGFLSP
|
| |