| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3668 |
|---|
| Symbol | |
|---|
| ID | 4458025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 4477260 |
|---|
| End bp | 4479212 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639704441 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_847773 |
|---|
| Protein GI | 116751086 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGATG AACGCGACGG GAACAAGACA CAGGCGGTGT GCTCTCCGCC TTTGAAATCC
CGACAAGCCC GAGAAGAAAT AACCGACGAC GCCGGAGGCA GACCGCTCCG CGACCGCCCC
CATATCACCC GCCGAAATCT CGATATCATT GAATTCCTTC CCGACGCCAC TTTTGTCATC
GATCGCGAGG GAAAAGTCAT CGCGTGGAAT CGAGCGATCG AGGAGATGAC CGGGGTGAGG
AAGAAGGACA TCCTTGGCCG GGGAGATTTT GCATATGCGG TGCCGTTTTA CGGCGAGCGC
CGTCCGATCG TCATCGATCT GGTGATGGGT GCGGATTCGA AATTCGAGCG GAAATACCAG
TATGTGAAAA AGCAGGGCGA GACGTATTTC GCTGAGGCTT ACGCGCCAAA TGCATACCGG
GGCAAAGGCG CCTATTTGTG GGGCAAGGCA TCCCCCCTGT ACGACGGCAA AGGCAACTGG
GTCGGCGCCA TCCAGTCGAT TCGCGACATA ACCGACAAGA GGTTGGCCGA TCAGGCTCTG
GCCAGAAGCG AACGACAGTT TCGCATGCTG GTTGAGACCA TGAACGAAGG GCTGTGCGTC
CGCGATGCGA ATGACCGGGT CCTTTACGCC AACGACAAGA TGTGCCGGCT TCTTGGGTAC
GTCCGGGAGG AGCTCGTCGG CATGCAGGTA TCGGCGCTTT TCGACAGCGC CAACCTGCTG
ATCCTTCAGC GTGAGATGGA GAAGCGCAGG AACCGGGAGG GCTCTCTTTA TGAAATCCAG
ATGAAATCGA GGGACGGTCG GAACATCCCG GTGCTTGTTT CGGGCAGGCC GATGTTCGGC
GAGCAGGGCG ACTATCGGGG AACCATCAGC ACGATGACCG ATATCACCAC GATCAAGGAA
GCCGAAACGA AACTGCGCGA ATCGGAACAA AAGTATCGCA TGATCTTCGA GAATTCGCCC
TTGGGCATTT TCCACTTTGA TGCCGACTGC GTCATTACGA CGGCCAACGA AAACATTTTC
CGGATTTGGG GCACCACCGC CGAGAAGCTT GTGGGCTTCA ACCTGAACAC ATCCTTGAAG
AACAAGAAGA TGAAGGCTGC GGTCATCGCG TGCATGTCCG GGAAGTCGGC ACATTACGAG
GGCAGCTACC TGTCGGTGAC GGGAGGGAAG ATTTCCAATT TGAAAGCGAA CTACGGCCCG
ATCCTGTCGG CGGACGGCAA GGTGATCGGA GGTATCGGGA TCATAGAGGA TATCTCGGAA
CGCAAGCAGA CCGAAGCGGC CCTGCAAGAG TCGGAGCGGC AGTTGCACCT CCTGTCGAGT
CAGCTTCTGG CAGCCCAGGA ACAGGAACGC AAGAGGATCG CCCGGGAGCT CCACGACGGC
ATCGGATCGT CTCTGAGCAC AATCAAGTTC AGCCTCGAGG CGACGCTACG ACGGATGAGG
CAGGGTTCAC AGAGTTACGA ATCCCTGCAG AACGTCATCG TTCTCACCCA GCACGCCATA
GACGAATCCA GAAGAATCAT GACCGATCTT CGTCCTCCCA TTCTGGATGA CTTCGGCATC
CTCACCACGA TGGACTGGTT TTGCGCACAA TTCAGGAAAG CCTACACGCA CCTCCGGGTG
GACAAGGAGA TCGAGGTCGT GGAGGAGGAC ATTCCGGAGG CCTTGAAAAT CGTCATTTTC
CGGGTATTGC AGGAGGCGCT TCACAACACC GCGAAGTACA GCCAGGCCAG CCGGGTCAAG
ATCGGCCTTC GCAAGACGCC GGGAACGCTC GAGCTCAAAA TCGGCGACAA CGGTATCGGA
TTTGACCGGA CCAGCGCCTC ACGCCGCAGC GATTCCTCAT CGGGTCTGGG TCTCCCCAGC
ATGAAGGAGC GAACCGAACT ATCCGGCGGA ACCTTCTCCG TCGAATCGAC CGAAGGGGCG
GGAACCACGC TTTGCGCGAC ATGGCCGCTC TGA
|
|---|
| Protein sequence | MSDERDGNKT QAVCSPPLKS RQAREEITDD AGGRPLRDRP HITRRNLDII EFLPDATFVI
DREGKVIAWN RAIEEMTGVR KKDILGRGDF AYAVPFYGER RPIVIDLVMG ADSKFERKYQ
YVKKQGETYF AEAYAPNAYR GKGAYLWGKA SPLYDGKGNW VGAIQSIRDI TDKRLADQAL
ARSERQFRML VETMNEGLCV RDANDRVLYA NDKMCRLLGY VREELVGMQV SALFDSANLL
ILQREMEKRR NREGSLYEIQ MKSRDGRNIP VLVSGRPMFG EQGDYRGTIS TMTDITTIKE
AETKLRESEQ KYRMIFENSP LGIFHFDADC VITTANENIF RIWGTTAEKL VGFNLNTSLK
NKKMKAAVIA CMSGKSAHYE GSYLSVTGGK ISNLKANYGP ILSADGKVIG GIGIIEDISE
RKQTEAALQE SERQLHLLSS QLLAAQEQER KRIARELHDG IGSSLSTIKF SLEATLRRMR
QGSQSYESLQ NVIVLTQHAI DESRRIMTDL RPPILDDFGI LTTMDWFCAQ FRKAYTHLRV
DKEIEVVEED IPEALKIVIF RVLQEALHNT AKYSQASRVK IGLRKTPGTL ELKIGDNGIG
FDRTSASRRS DSSSGLGLPS MKERTELSGG TFSVESTEGA GTTLCATWPL
|
|---|
| |