Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3658 |
Symbol | |
ID | 4458015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 4465504 |
End bp | 4467885 |
Gene Length | 2382 bp |
Protein Length | 793 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639704431 |
Product | general secretion pathway protein D |
Protein accession | YP_847763 |
Protein GI | 116751076 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGATAT GCCGGGCCAT AGGGGTTGTT TTGATGGCCT CTGTCCTGTT GTCCTGCGGT ACGGCGGGCA CTCCGCCTCC ACGGGCGCCG CGCACCGTCT GGGGAGCAGT CCCCGAGCAG AAAGCGAAGT CACCCGCCGA GGTCCTGAGT CCCGTCGCCC TGGATTCACC CAAAGAGAAG CAGGTGTCGC TGGACGATCC GAAGAAAGAC TCCGATGCAG CCAAGAAAAA GCCCGTCCTC CCGCGCCACG AGGGGAAGAC GACCTCCGGC CTGCTCACCC CGCCCGCCGG GGGAAAAGGA GAGAGAGTTC CAGTCGGGGA AGGCGAACGT CAGAAGGTCG TCTTCAATTT CGACAAGGCC GACCTGGGAG AGGTCACAAG CCAGGTATTC GGCGATTACC TCAAGCTCAA CTATGTGCTG GACCCCACTC TTCAAGGCCG GATCAGCATG TACCTGGAGG GCGAGTTCAA CAGGACCGAG CTGCTCCAGA TGATCATCAA AGCTTTCGAG GCAAACAACG TTTCGATCAC CCCCCAGAAG GGACTCTACT ATATTCAGCC CTTGCAGCGC AGCGCCAGCA GCAGCCTGTC CCTCGCCGAC ACCATCACGT TGAAGCCGGA CAAGGACGGG GTGAGACCCG TCATCGTCAT CTACAAACTG CGCTACCTGG ACGTCAAACA GGCGCTCAAC ACCGTAAAAT CCTTCATCAC CCCCGGGCGG CCCCTCATTT CGGACACCAT GTCCAACAGC CTCATCTTCG TCGAGAGCAG CGACAATGCC CACTCCATCG TTGAAGTCCT CAGAACGATG GATATGAACA TCCTTCAGGA AGTGAGCATG GAGGTCGTTC AGCTGCAATC CATCGCTCCG CAGGACGCCG TCCAGGGGAT GGACGCCCTT ATGGGCAAAC TGGGCCTCTT CAAGGAGACG AACCTCAAGA ACAATCTCGC GTTCATCCCC CTGGTGAATT TCCGCGGCGT GCTGGTCCTG GCCCAGACAC CCGAGTTGCT CAAGACCGCC AGGCAATGGA TCAACGCCCT GGACACCCAT GGCGGCGAAG TGGGAGAGCA GATCTACGTC TACTACGTCC AAAACGGGCT GGCCAAGGAC ATCGGAGACA TTTTGCTGCA GGTGTACGGA ATCGCGGCAC CCGAAAGGCG ACCGGAAAAA CAGGTCGTCC AATCGACCAC CGGGAGGAGA ACCTTCGGCA GCGGCTCGTC TTTCGGAGGT GGGTCGACTT CCTCGGGTTT CGGCACCTCG TCGAGCGGTT CGTCCTTTGG CAGCTCATCG AGCAGTCGAT TCCGCTCGGC GTCCTCGGAC TCATCCGGCC AGTATGGGGG GACCGGCTCG GCGTTCGGAC AAACCACTGG CAGCGGGGCT TCGGCTCAGC GCGCGGCGCG CAGCGCCGCG GGCCGCGCGG GAGGACAGAG TCCGCCGACA TCGGTGTCCC CCGAAGTGAT GATCATCCCC GATGAGGTCA ACAATGCCAT AGTGGTCCGT GCAAACGCCA CCGACTACGC CAAGATAAAG AAGACCATCG AAGCGCTGGA TATCCTGCCC CGCGCCGTCC TGATCGAGGT CATCATTGCC GAGGTCGCGC TGACCAAGGA TTTCGAGTAC GGGCTGAAAT GGTACTTCAG CCATGCGGAA GTCGGAGCCG GCGTCGGGCA AGGCTCCCTC AACGGACTGG GAGGCGTGTC CGACATTGCT CTCAACCTGG CCGGCATATC CTCCGCGGGC GGCATGGCAC TGGCCTGGGT CAGCAATGCC AAAGACATGG CGGGGGTCTT GAGCTGGCTG TCCTCGAAAA CCAAAGTGAA GATTCTCTCC ACGCCCACCC TGCTGGCAAC CGACAACAAG GAAGCCGCCA TCCAGGTGGG TGGACGGACG CCCGTACCGA GCGGGTCCTA CACCGGGGGG ACCTCGACCA CCCTCGACAC TGTGTTCAGC ACCATCGAAT ACGAGGAAAC CGGCACCATA CTTACCGTTA CACCTCACAT CAACGCCGGA GGCCTGGTCC GCCTGGAAGT GGAACAGACC ATCCGCCGGG TCGGCGCCAA TGCCACCGTC GGGGTCAACA ACACCGCGCC CACCTTCACC GAGCGAAACC TGAAGACGAC GCTGCTGGCC CAGGACGGCT CCACCGTGGT CATCGGCGGC ATAATCGACG AAATCGACCG GGACACCACC ACCGGCGCGC CGATGCTGGT CGATGTTCCC ATTATCGGCC CGCTTTTTGG GCAGAAGGGC AAAAGCAGGG AACGCACGGA ACTGCTCATT GCGATCACGC CGCGGGTCGT CGAAAGACGC GGGAGTGATT CTCTGCGGGA ATTCGTGGGC AAGATGAGAG ATCTAAGGCA GCTTATCCAT CCCAACCCCT GA
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Protein sequence | MKICRAIGVV LMASVLLSCG TAGTPPPRAP RTVWGAVPEQ KAKSPAEVLS PVALDSPKEK QVSLDDPKKD SDAAKKKPVL PRHEGKTTSG LLTPPAGGKG ERVPVGEGER QKVVFNFDKA DLGEVTSQVF GDYLKLNYVL DPTLQGRISM YLEGEFNRTE LLQMIIKAFE ANNVSITPQK GLYYIQPLQR SASSSLSLAD TITLKPDKDG VRPVIVIYKL RYLDVKQALN TVKSFITPGR PLISDTMSNS LIFVESSDNA HSIVEVLRTM DMNILQEVSM EVVQLQSIAP QDAVQGMDAL MGKLGLFKET NLKNNLAFIP LVNFRGVLVL AQTPELLKTA RQWINALDTH GGEVGEQIYV YYVQNGLAKD IGDILLQVYG IAAPERRPEK QVVQSTTGRR TFGSGSSFGG GSTSSGFGTS SSGSSFGSSS SSRFRSASSD SSGQYGGTGS AFGQTTGSGA SAQRAARSAA GRAGGQSPPT SVSPEVMIIP DEVNNAIVVR ANATDYAKIK KTIEALDILP RAVLIEVIIA EVALTKDFEY GLKWYFSHAE VGAGVGQGSL NGLGGVSDIA LNLAGISSAG GMALAWVSNA KDMAGVLSWL SSKTKVKILS TPTLLATDNK EAAIQVGGRT PVPSGSYTGG TSTTLDTVFS TIEYEETGTI LTVTPHINAG GLVRLEVEQT IRRVGANATV GVNNTAPTFT ERNLKTTLLA QDGSTVVIGG IIDEIDRDTT TGAPMLVDVP IIGPLFGQKG KSRERTELLI AITPRVVERR GSDSLREFVG KMRDLRQLIH PNP
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