| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3592 |
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| Symbol | |
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| ID | 4458083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 4402920 |
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| End bp | 4404479 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639704363 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_847697 |
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| Protein GI | 116751010 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.312261 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGGA AGCGGCCGCT GAAAAGCATG GGGCGAAACT TTCGGCCGAT GAAAACCGTC
TCCCCGGCGA TGCCTTGGTG CTCGGGCGAG AGGACCTTTC ACGGTTTTTC CGGAATGTGC
GTGTCCCGGG CCGCCGGCCT GCCGGCTCGA CCGGGCGCGA TCCATGGGAA AGAGACGCTC
CTCGGAGGGG AAAATCCAGT GGCTCAATCG GCAAAACAGC ACATCTTGTC CCCGCAGACG
GAAACCATCC TCGACAGTAT TGCGGACGGG GTTTTCACGG TGGATCTCGA CTGGCGGATC
ACATCGTTTA ACCGGGCGGC TGAAGAGATC ACGGGGGTTT CGGCATCGGA CGCCATTGGA
CGGCCGTGTT GCGAAGTCTT TCGAGCCAAC GTCTGCGAGT CCACTTGTGT CTTGAAGTTC
ACCATGGAAA CCAGGAAGCC CATCGTCAAC AAATCTGTTG CAATCCTCAG GGCCGACGGC
AGGGAAATCC CCATCAGCGT GAGCACGGCT CTGCTCAAGA ACGCATCGGG GCACACCATC
GGCGGAGTGG AGACGTTTCG GGACCTCAGC CTGGTGGAAA CGTTGCGAAA GGAAATCGAC
CGTCAATATC GTTTCCAGGA CATTGTTTCC AAGTCCCCAG CAATGCTGGA GCTTTTTGCC
ATTCTGCCGG AGGTGGCGCG AAGTGAGAGC ACGGTGCTCA TTCAAGGCGA GAGCGGCACC
GGCAAGGAAC TGTTGAGCCG CGCGGTGCAC AGCTTGAGCT CCCGTGCGGC GGGTCCTTTC
GTGGCGATCA ATTGCGGCGC CCTTCCCGAT ACTCTGCTGG AATCCGAGCT TTTCGGACAT
GTCGCCGGCG CATTCACGGA TGCCAGGAAG AACCGCGCGG GCCGTTTCGC ACAGGCGGAA
GGCGGTACGC TGTTCCTGGA TGAAATCGGG GACGTTTCAC CCGCTTTGCA GGTGAGACTG
CTGAGAGTTC TCGAAGAGCG GACCTACGAG CCCCTCGGTT CCTCCAGAAC GGTAACGGCG
AACGTTCGGA TTGTCGCCGC GTCCAACAGG GACCTGGCTC AACTGGTCGC GGAAGGATCA
TTCCGCAAAG ACCTGTATTA CCGCATCAAC GTGGTCAAGC TGGAGCTGCC GACGCTTGCC
CGGCGCAAGG AAGACATCCC GCTGCTCGCG GAGCATTTCA TCGCGCGCCT CAACAAGCTG
CGGAACAAGA ACATCCTTGG GCTGAGTCAC GAGGCTTTGG CCGTTTTCAT GCGTCACAAC
TGGCCCGGCA ACATTCGAGA ATTGGAAAAC GTCATCGAAT ACGCGTTTAT ACTGTGCCGA
GGAGGGTTGA TTCAGCCGGC CTTCCTTCCG GAATACCTGC ACGCTCACGC GTGCGTTCTT
CCCGATTCGG GAGGACTGTC GCTCAGGGAC AACGAGGCGC GCGCCATCAG GGACGCCCTC
GATCGCAACC AGTGGCGGCG CATGGCCACC GCCAGGGAAC TGGGGATCGA TAAGAACACT
CTGCGCCGCA AAATGAAACG GCTCAATATC CGCGCCGACG ATCCCCGCCG TGACGAATGA
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| Protein sequence | MPRKRPLKSM GRNFRPMKTV SPAMPWCSGE RTFHGFSGMC VSRAAGLPAR PGAIHGKETL
LGGENPVAQS AKQHILSPQT ETILDSIADG VFTVDLDWRI TSFNRAAEEI TGVSASDAIG
RPCCEVFRAN VCESTCVLKF TMETRKPIVN KSVAILRADG REIPISVSTA LLKNASGHTI
GGVETFRDLS LVETLRKEID RQYRFQDIVS KSPAMLELFA ILPEVARSES TVLIQGESGT
GKELLSRAVH SLSSRAAGPF VAINCGALPD TLLESELFGH VAGAFTDARK NRAGRFAQAE
GGTLFLDEIG DVSPALQVRL LRVLEERTYE PLGSSRTVTA NVRIVAASNR DLAQLVAEGS
FRKDLYYRIN VVKLELPTLA RRKEDIPLLA EHFIARLNKL RNKNILGLSH EALAVFMRHN
WPGNIRELEN VIEYAFILCR GGLIQPAFLP EYLHAHACVL PDSGGLSLRD NEARAIRDAL
DRNQWRRMAT ARELGIDKNT LRRKMKRLNI RADDPRRDE
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