| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3587 |
|---|
| Symbol | |
|---|
| ID | 4458113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 4397086 |
|---|
| End bp | 4397607 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639704358 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_847692 |
|---|
| Protein GI | 116751005 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.677998 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.475596 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTTCG ACATACTCAA TAAGGTGATC AAAGCGGCAA CCGTCCTGAT TCTCGCCGTC
ATCACGATTT TCGTGTCGGT CGAGGTCGTT CTGCGCTACT TTTTCGGGAT GACGCTTTAC
ATCACCGAGG AGTTCACGCG TTACTCCATG GTCTGGATGG TCTTCCTGGG CGCGAGCCTG
GCCGTCAGGG AAAATGCGCA CACCCGGGTG GAGCTCTTCG TCAACTTTTT CCCCGGCAAG
GTCCGCGCCT GGTTGAATCT CGCCGCCCAC CTTCTCTTTG TTTTCTTTCT GAGTTTTCTT
GTCTACGAGG GGTGCATCGC CCTCTCCTTT CAGTTCGAAC AGATCATTCC CACCCTCGGT
ATTCCCATGT TCTGGTTCTA CCTGGCGCTC CCGGTGGGCG GGGTGCTCAT GATCCTCAAC
CTGCTCCCCA AAATCTGGGA AAGCGTTCTG GTAATCTCCG GCAGGATGGC GCCTCCTGAA
GAAGAATTCG AAATCCCCGT CATCGACGGA GGTCTTTCAT GA
|
|---|
| Protein sequence | MFFDILNKVI KAATVLILAV ITIFVSVEVV LRYFFGMTLY ITEEFTRYSM VWMVFLGASL
AVRENAHTRV ELFVNFFPGK VRAWLNLAAH LLFVFFLSFL VYEGCIALSF QFEQIIPTLG
IPMFWFYLAL PVGGVLMILN LLPKIWESVL VISGRMAPPE EEFEIPVIDG GLS
|
|---|
| |