Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3567 |
Symbol | |
ID | 4458128 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 4369861 |
End bp | 4372077 |
Gene Length | 2217 bp |
Protein Length | 738 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639704338 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_847672 |
Protein GI | 116750985 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.339814 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCAGCTGA ATCCGCTTGC AGTGATAGTA TTCGGTTCCG CAACCGTCCT GTTTCTTCTC GGTTGGAGCG GGCTGCGCCG TCGAAACGCC CGTGGGGCGA CCGCCTTCTG CGTGCTCATG CTGGCGTGCG CCGTCTATTC GTTCGGCTAC GCGTTCGAGC TCACCGTGAC GACCCTCCCC GCCATGATGT TCTGGTTGAG AGTCGAATAC CTCGGTGTTC CATTTATTCC CGCCCTCTAT GTCGTTTTCG CCATTCAGCA CGTTGGAGCG GACAAGTGGT TGACAAGGCC CGTATACGGC TTTCTGTTCC TTATTCCCCT GCTTACGTTT CTGCTCTTCC AAACGAACGA GTATCATCAT CTCTATTACC GGACAGGCTG GATCAACGAC TCCGGTCCCT TGCCGCTCCA TTCCTTTACG CCGGGTTCCT TGTACTGGGT CCAGATGGTA TATATCAGCG CCTGTTTCTT TTTCGCCAAT ACCCTGTTTC TCAGGATGCG CCTGCGTGTT CCGGAACCTT ACAGGAAACA GGCCGACGTC ATGCTGGTGA GCTCAGTGGT CCCCTGGGCG GCAAACATCG TCTACCTGGC CGGGTATAGT CCCTGGGGCA TCGACCTGCA TCCCCTGGCG TTCACCTTCA GCGGCATCGG CTTTGCCTGG GGGGTGTTCC GCCACCGGCT CCTGGATCTC GTGCCGGTGG CCCGCGCGAC GGTATTCGAA GGGATGCGCG ACGGGGTCAT TGTGCTGGAC AACCGGGGAC GCATCGCGGA CATGAATCCG GTGGCCGCAC GGTTTCTGGG GGCGACGGAA GAAGCGATCG GTCAACCGGC CTCGGAGGTG CCGGCGCTGG GCCTCGAGCA CACGGGAAGG ATTCTCGCCG GAACCGAGGG ACGGCTGGAA TTCATGGGCG GCTCCCCCGA ATGCCCGTTG TGGCTCGAAA TGGACATCTC CACGTTGAAA GATCGTCGCG GGCTTGAAAG CGGACGGTTG ATCGTCATGC GAGACATCAC CGAGCGCAAA CATGCGGAGA CGGAACGGCT GGAGATGGAG CGGCGCCTTC TGCATGCCCA GAAACTCGAA AGCCTGGGGC TGCTGGCGGG CGGCATCGCT CATGATTTCA ACAACCTGCT CATGGTGATC CTCGGCAACC TGGAATTGGC CCGGATGTCC ATCCCCGCAA GATCTCCCGC TCACTCCAAC ATCACCGACG CGGCCGCCGG CGCTCACAGG GCCGCCGAGC TCACCCGCCA GATGCTGGCC TACTCGGGCA AGGGCATCTT CCTCAAGGAT GCCCTGGATC TGAACCAACT GGTGAGGGAT ATGGGCAGCC TGTTGAAGGT CTCCATATCC AAGAGTGCTT CCCTGGAACT CAGGCTCGCC CCGGAGTTGC CTCTCATCAT GGCGGATTCC GGACAGATGC AGCAGATCGT GATGAACGTC ATCATCAATG CGTCGGAAGC TCTGGGCGAA GAGGGGGGAG TGATCACGGT CACCACGGCT GCGCGCGAAT ACGACGAGAA GGGACTGCTG CGCAGCTACC TGGAAGAAAA ACCACCGGCG GGCCGGTTCG TCAGCCTGGA GATATCCGAC GGCGGGTGCG GCATGGATGA AGAGACGCGC AGGCTCCTTT TCGACCCGTT TTTTTCCACC AAGTCGGTGG GCCGCGGCCT GGGGCTGTCG GCGGTGCTCG GCATCGTGCG CGGCCACGAC GGAGCGATCA TGGTGGACAG CGCCCCGGGG CGGGGAACGA AGGTGACGCT TCTGTTCCGC GTTCATGAAG AGAAGCCGGT TCAGCCGGAG CCGCGGGCTC CCGCGGTTTT TCCTTCCATG GAAGGGGATC CGGCCCTGTC TTCCGGGACG GTCCTGGTAG TGGACGACGA GGACATGGTC CGGGAAGTGT GCGAGGCGAT TTTAAGGCAT TTCGGCTTCA AGGTCTTGAC GGCGGCCGGC GGCGAGGAAG CTCTGGATGT CTTCCGCGCC AACAGGGGTG AGATTCGGTG CGTGATCCTC GACCTGACCA TGCCGATGAT GGACGGTCCC ACCGTGTTCG GCCACATACT GGCCGTTCAG CCCGAAATGC CGGTGATCCT GGCCAGCGGC TACAGCCTGG CCGAAGTATC CCGCCGATAT GGCGATCGCG GATTTGCAGG GTTTATCCAG AAACCCTACA GCACCCAACA TCTCTACGAC GAGTTGCGAA AGGTGCTGGC GAACTGA
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Protein sequence | MQLNPLAVIV FGSATVLFLL GWSGLRRRNA RGATAFCVLM LACAVYSFGY AFELTVTTLP AMMFWLRVEY LGVPFIPALY VVFAIQHVGA DKWLTRPVYG FLFLIPLLTF LLFQTNEYHH LYYRTGWIND SGPLPLHSFT PGSLYWVQMV YISACFFFAN TLFLRMRLRV PEPYRKQADV MLVSSVVPWA ANIVYLAGYS PWGIDLHPLA FTFSGIGFAW GVFRHRLLDL VPVARATVFE GMRDGVIVLD NRGRIADMNP VAARFLGATE EAIGQPASEV PALGLEHTGR ILAGTEGRLE FMGGSPECPL WLEMDISTLK DRRGLESGRL IVMRDITERK HAETERLEME RRLLHAQKLE SLGLLAGGIA HDFNNLLMVI LGNLELARMS IPARSPAHSN ITDAAAGAHR AAELTRQMLA YSGKGIFLKD ALDLNQLVRD MGSLLKVSIS KSASLELRLA PELPLIMADS GQMQQIVMNV IINASEALGE EGGVITVTTA AREYDEKGLL RSYLEEKPPA GRFVSLEISD GGCGMDEETR RLLFDPFFST KSVGRGLGLS AVLGIVRGHD GAIMVDSAPG RGTKVTLLFR VHEEKPVQPE PRAPAVFPSM EGDPALSSGT VLVVDDEDMV REVCEAILRH FGFKVLTAAG GEEALDVFRA NRGEIRCVIL DLTMPMMDGP TVFGHILAVQ PEMPVILASG YSLAEVSRRY GDRGFAGFIQ KPYSTQHLYD ELRKVLAN
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