Gene Sfum_3567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3567 
Symbol 
ID4458128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4369861 
End bp4372077 
Gene Length2217 bp 
Protein Length738 aa 
Translation table11 
GC content61% 
IMG OID639704338 
Productputative PAS/PAC sensor protein 
Protein accessionYP_847672 
Protein GI116750985 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.339814 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCAGCTGA ATCCGCTTGC AGTGATAGTA TTCGGTTCCG CAACCGTCCT GTTTCTTCTC 
GGTTGGAGCG GGCTGCGCCG TCGAAACGCC CGTGGGGCGA CCGCCTTCTG CGTGCTCATG
CTGGCGTGCG CCGTCTATTC GTTCGGCTAC GCGTTCGAGC TCACCGTGAC GACCCTCCCC
GCCATGATGT TCTGGTTGAG AGTCGAATAC CTCGGTGTTC CATTTATTCC CGCCCTCTAT
GTCGTTTTCG CCATTCAGCA CGTTGGAGCG GACAAGTGGT TGACAAGGCC CGTATACGGC
TTTCTGTTCC TTATTCCCCT GCTTACGTTT CTGCTCTTCC AAACGAACGA GTATCATCAT
CTCTATTACC GGACAGGCTG GATCAACGAC TCCGGTCCCT TGCCGCTCCA TTCCTTTACG
CCGGGTTCCT TGTACTGGGT CCAGATGGTA TATATCAGCG CCTGTTTCTT TTTCGCCAAT
ACCCTGTTTC TCAGGATGCG CCTGCGTGTT CCGGAACCTT ACAGGAAACA GGCCGACGTC
ATGCTGGTGA GCTCAGTGGT CCCCTGGGCG GCAAACATCG TCTACCTGGC CGGGTATAGT
CCCTGGGGCA TCGACCTGCA TCCCCTGGCG TTCACCTTCA GCGGCATCGG CTTTGCCTGG
GGGGTGTTCC GCCACCGGCT CCTGGATCTC GTGCCGGTGG CCCGCGCGAC GGTATTCGAA
GGGATGCGCG ACGGGGTCAT TGTGCTGGAC AACCGGGGAC GCATCGCGGA CATGAATCCG
GTGGCCGCAC GGTTTCTGGG GGCGACGGAA GAAGCGATCG GTCAACCGGC CTCGGAGGTG
CCGGCGCTGG GCCTCGAGCA CACGGGAAGG ATTCTCGCCG GAACCGAGGG ACGGCTGGAA
TTCATGGGCG GCTCCCCCGA ATGCCCGTTG TGGCTCGAAA TGGACATCTC CACGTTGAAA
GATCGTCGCG GGCTTGAAAG CGGACGGTTG ATCGTCATGC GAGACATCAC CGAGCGCAAA
CATGCGGAGA CGGAACGGCT GGAGATGGAG CGGCGCCTTC TGCATGCCCA GAAACTCGAA
AGCCTGGGGC TGCTGGCGGG CGGCATCGCT CATGATTTCA ACAACCTGCT CATGGTGATC
CTCGGCAACC TGGAATTGGC CCGGATGTCC ATCCCCGCAA GATCTCCCGC TCACTCCAAC
ATCACCGACG CGGCCGCCGG CGCTCACAGG GCCGCCGAGC TCACCCGCCA GATGCTGGCC
TACTCGGGCA AGGGCATCTT CCTCAAGGAT GCCCTGGATC TGAACCAACT GGTGAGGGAT
ATGGGCAGCC TGTTGAAGGT CTCCATATCC AAGAGTGCTT CCCTGGAACT CAGGCTCGCC
CCGGAGTTGC CTCTCATCAT GGCGGATTCC GGACAGATGC AGCAGATCGT GATGAACGTC
ATCATCAATG CGTCGGAAGC TCTGGGCGAA GAGGGGGGAG TGATCACGGT CACCACGGCT
GCGCGCGAAT ACGACGAGAA GGGACTGCTG CGCAGCTACC TGGAAGAAAA ACCACCGGCG
GGCCGGTTCG TCAGCCTGGA GATATCCGAC GGCGGGTGCG GCATGGATGA AGAGACGCGC
AGGCTCCTTT TCGACCCGTT TTTTTCCACC AAGTCGGTGG GCCGCGGCCT GGGGCTGTCG
GCGGTGCTCG GCATCGTGCG CGGCCACGAC GGAGCGATCA TGGTGGACAG CGCCCCGGGG
CGGGGAACGA AGGTGACGCT TCTGTTCCGC GTTCATGAAG AGAAGCCGGT TCAGCCGGAG
CCGCGGGCTC CCGCGGTTTT TCCTTCCATG GAAGGGGATC CGGCCCTGTC TTCCGGGACG
GTCCTGGTAG TGGACGACGA GGACATGGTC CGGGAAGTGT GCGAGGCGAT TTTAAGGCAT
TTCGGCTTCA AGGTCTTGAC GGCGGCCGGC GGCGAGGAAG CTCTGGATGT CTTCCGCGCC
AACAGGGGTG AGATTCGGTG CGTGATCCTC GACCTGACCA TGCCGATGAT GGACGGTCCC
ACCGTGTTCG GCCACATACT GGCCGTTCAG CCCGAAATGC CGGTGATCCT GGCCAGCGGC
TACAGCCTGG CCGAAGTATC CCGCCGATAT GGCGATCGCG GATTTGCAGG GTTTATCCAG
AAACCCTACA GCACCCAACA TCTCTACGAC GAGTTGCGAA AGGTGCTGGC GAACTGA
 
Protein sequence
MQLNPLAVIV FGSATVLFLL GWSGLRRRNA RGATAFCVLM LACAVYSFGY AFELTVTTLP 
AMMFWLRVEY LGVPFIPALY VVFAIQHVGA DKWLTRPVYG FLFLIPLLTF LLFQTNEYHH
LYYRTGWIND SGPLPLHSFT PGSLYWVQMV YISACFFFAN TLFLRMRLRV PEPYRKQADV
MLVSSVVPWA ANIVYLAGYS PWGIDLHPLA FTFSGIGFAW GVFRHRLLDL VPVARATVFE
GMRDGVIVLD NRGRIADMNP VAARFLGATE EAIGQPASEV PALGLEHTGR ILAGTEGRLE
FMGGSPECPL WLEMDISTLK DRRGLESGRL IVMRDITERK HAETERLEME RRLLHAQKLE
SLGLLAGGIA HDFNNLLMVI LGNLELARMS IPARSPAHSN ITDAAAGAHR AAELTRQMLA
YSGKGIFLKD ALDLNQLVRD MGSLLKVSIS KSASLELRLA PELPLIMADS GQMQQIVMNV
IINASEALGE EGGVITVTTA AREYDEKGLL RSYLEEKPPA GRFVSLEISD GGCGMDEETR
RLLFDPFFST KSVGRGLGLS AVLGIVRGHD GAIMVDSAPG RGTKVTLLFR VHEEKPVQPE
PRAPAVFPSM EGDPALSSGT VLVVDDEDMV REVCEAILRH FGFKVLTAAG GEEALDVFRA
NRGEIRCVIL DLTMPMMDGP TVFGHILAVQ PEMPVILASG YSLAEVSRRY GDRGFAGFIQ
KPYSTQHLYD ELRKVLAN