Gene Sfum_3544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3544 
Symbol 
ID4458140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4337579 
End bp4338565 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content64% 
IMG OID639704315 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_847649 
Protein GI116750962 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase
[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACAG GACAACAGGA AACCTTGCTG GCGCTCAGCA ACCTGAAAAA GCACTATCCC 
ATCACCCGCG GATTCGTCCG CAGGCAGGTC GGAAGCGTCA GGGCCGTCGA CGGCGTCGAC
CTCGCCGTCA GCCGGGGAGA GACCCTGGGG CTGGTGGGCG AAAGCGGCTG CGGGAAATCG
ACGCTGGGAC GCCTGATCCT GCGCCTGGAA TCGCCAACGC AGGGAGAAAT CACCTACGAT
GGGAAAAACC TGCTGACGCT CCCGGCCCGG GAAATGCACG CCCTCAGGCG CAGGATGCAG
ATCATTTTCC AGGATCCCTA TTCATCCCTC AATCCCAGGC AGACCGTGGG CAGAACCATC
GGCGAAGGGC TGGTGATCCA CCGCGTGGGC ACGGCGGCCG AACGGCGGGA ACGGGTTCGG
GAGATCATGG AAGTGGTCGG CCTGAGGCCG GAGCAGATCA ACCGCTACCC GCACGAGTTC
AGCGGCGGAC AGCGCCAGCG CATCGGGATT GCGCGCGCCC TGGCGCTCAA CCCCGAGTTC
ATGATCTGCG ACGAGCCCCT GTCCGCCCTC GACGTCTCCA TCCAGGCGCA GGTGATCAAC
CTCCTCCTCG ACCTGCAGGA ACGGTTTCGC CTGACCTACC TCTTCATCTC GCACGACCTT
TCCGTCGTGC GGCACATCAG CGACCGGGTC GCCGTGATGT ACCTGGGGCG CATCGTGGAA
CTGGCGGAAA AGACGACGTT GTTCGACAGC CCGTGCCATC CCTATACGAA AACGCTCCTT
GAGGCCATCC CGGTCCCCGA CCCGAAAGCT TCCGGAAAGC GCGGACACGC CAAGGCGGAG
TTGGAGCCGG ACACCTGCGA GCTTGCGCGA TGCGTGTTCA AACCGCGCTG CCGGGAGGCG
ACGCCCGCCT GTGACGATCG AGCGCCGCCA TTGGTGGAAC ACGCTCCGGG ACACTGGGTG
AGGTGCTTTC GGCACGGCGT GGAATGA
 
Protein sequence
MQTGQQETLL ALSNLKKHYP ITRGFVRRQV GSVRAVDGVD LAVSRGETLG LVGESGCGKS 
TLGRLILRLE SPTQGEITYD GKNLLTLPAR EMHALRRRMQ IIFQDPYSSL NPRQTVGRTI
GEGLVIHRVG TAAERRERVR EIMEVVGLRP EQINRYPHEF SGGQRQRIGI ARALALNPEF
MICDEPLSAL DVSIQAQVIN LLLDLQERFR LTYLFISHDL SVVRHISDRV AVMYLGRIVE
LAEKTTLFDS PCHPYTKTLL EAIPVPDPKA SGKRGHAKAE LEPDTCELAR CVFKPRCREA
TPACDDRAPP LVEHAPGHWV RCFRHGVE