| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3519 |
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| Symbol | |
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| ID | 4458185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 4305365 |
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| End bp | 4307638 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639704290 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_847624 |
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| Protein GI | 116750937 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.324252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAGCC GGGACGGTAC CGTGCGAGCC GCCGCGCACG AGACCAAGCC CGTGACAACG
CGCTCCGAAA AGGAGCAGTT GCGCGGTCTG CTGGTGAGAC AGCTCTACGC CCTGGTGCCC
GTCGGTCTCA GCGCCGCGGT GTCCAGCGGC GGCATTCTCG TGCTGGTGCT TTGGAGCGAG
CTTCCCCACG GGCGCCTGTT GATCTGGTTG GCGGCGATGC TTTCCCTGGC GTTGTTGCAG
TACCTGCTGA TGATCGCCTA CCGCCGCCGT CCCGCGGCCG CCGAATCCGC TTCCCCGTGG
TTCGTCCTCT TTATTGCCGT CTTTGCATCA AACGGTCTGG TCTGGGGCTC GGCGGCCCTG
TTCTTGTTTC CGCACGACTC ATTGGCGCAC CAGGTGTTCG TGGCGTTCGT CCTGGGAGGC
ATGACGGCCG GAGCGGCGGG AACCTTTTCC GCCACGTTTT CGGCTTTTCT GGCATTCAGC
GCCCCCGCCT TCCTCCCGGT CGTCGTCAGA TTCTTTCTCA TCAACGATGA CCTGCATCTG
GCCATGGGAA CGCTGCTTAT CATCTTTGCC GGTTCGATGG TCGTGTGCGC CCTTCGCGTG
AACCAGGCCA TCGTGTCTTC CTTCCGGCAA GGTCTGAAGA ACCTGGATCT CATCGCGGAC
CTCACCGAAT CCAACGCACG GCTCGGACGC CTCAATGCGC TTCTGGAACA CGAAATCGCC
CAGCGCCAGA AGGCGGAAGA GGCGCTTCGG CAATCCGAGA GCATCTATCG GACCATTTTC
GAACACACCG GCACGGCCAC CTTTATTGTT GAAGAAGACG CAACGGTATC GATGATGAAC
AGTCAGTGCG AGAAGTTTTC GGGTTATTCG CGAACCGAGG TGGAAGGGCG GATGAAGTTC
GACCAGTTCG TTGCGGAAGA GGACCTGCAA CGGGTGAGCG AATACCACCG CATGCGGCGT
CTCGATTCCG GGACGGCTCC CGAACGCTTC GAATTCCGCT TCAAGGACAG GTTCGGGCGT
GTCAGGGACA TCCTGGCGAC AGTGGGCATG ATTGCCGGCA CCAGGCGCAG TGTGGCTTCC
CTGGTGGACA TTTCCGAGAA GAAGAAAGTG GAAGAAGAAC ACCTCAAGAT CGAAAAACTC
GAATCCCTGG GGATTCTTGC AGGTGGAATC GCTCATGATT TCAATAATAT ATTGACGGCG
ATCCTCGGCA ACATCTCCCT TGCCAAAATA TATGCCCGGG ACAAGGTCCG CAAACGCCTG
GAAGAGGCGG AACGAGCGAG CGCCAAGGCC AGGGATCTCA CCCAGCAGCT GCTCAGCTTC
GCCAAAGCCG GCGCACCCGT CAAGAGGACC CTGTCTCTCG CGGAGCTCAT CCGGGAATCG
GCGTCGTTCG GGCTGAGCGG CTCCAACGTC CGGTGCGAAT TCTCCATACC TGACGGCTTG
TGGCTGGTGG ATGTCGATGA AGGCCAGATC AGTCGGGTCA TCACCAACCT GGTCATCAAT
GCCGACCAGG CCATGCCCGA GGGCGGGACC ATCGAGGTGT CCGCGGAAAA CGCGGCTTTC
CGGACGGCGG AAAACGCGAG GCTTCCGCTC CGGCCGGGCA AGTACGTCAA GATATCCGTT
CGCGATCATG GGGACGGCAT CCCCGGGGAA CACCTGGCCA AGATATTCGA CCCGTATTTT
TCCACCAAGG AAAAAGGAAC GGGGCTGGGT CTCGCCACCG TCTACTCCAT CGTCAGCAAG
CACGGCGGTT GCGTTGACGT GGAGTCGAGA CCGGGTATCG GTTCGACCTT CCACTTTTAT
CTGCCGGCAT CGAGGAAACA GGTTGTGGAA GGGATTGAAA CAGCCAGGAG ACCTTTGTCC
GGCAAGGGAA GAATCCTCAT CATGGAGGAT GGTGAGGAGG TGAGGCGAAT CCTTGCGGAG
ATGCTGGAGC ACCTGGGCTA CGAGGCGGAT TCGGTGCGCA ACGGAGCCGA ATTGATCCGG
ATGTACAAAG AATCGAGGGC CATGGGTCGT CACTACGATC TGGTCATCAT GGACCTCACC
GTCCCGGGAG GCATGGGCGC CAGGGAGACG ATCACGCAGC TCAAGGACCT GGACCCGAAG
GCCCGCGCAG TTGTCTCCAG CGGATACTCC AACGATCCGG TAATGGCGGA TTTCTCCGAC
TACGGCTTTG TGGACGTCAT TTCCAAGCCC TACAAGATCG AAGAGCTCTC GGACCTGCTC
AAAAAGGTGA TGAGGGGAAA AGAAAGCAAG ATGCTCCGGT TTCTGGCATC CTGA
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| Protein sequence | MPSRDGTVRA AAHETKPVTT RSEKEQLRGL LVRQLYALVP VGLSAAVSSG GILVLVLWSE
LPHGRLLIWL AAMLSLALLQ YLLMIAYRRR PAAAESASPW FVLFIAVFAS NGLVWGSAAL
FLFPHDSLAH QVFVAFVLGG MTAGAAGTFS ATFSAFLAFS APAFLPVVVR FFLINDDLHL
AMGTLLIIFA GSMVVCALRV NQAIVSSFRQ GLKNLDLIAD LTESNARLGR LNALLEHEIA
QRQKAEEALR QSESIYRTIF EHTGTATFIV EEDATVSMMN SQCEKFSGYS RTEVEGRMKF
DQFVAEEDLQ RVSEYHRMRR LDSGTAPERF EFRFKDRFGR VRDILATVGM IAGTRRSVAS
LVDISEKKKV EEEHLKIEKL ESLGILAGGI AHDFNNILTA ILGNISLAKI YARDKVRKRL
EEAERASAKA RDLTQQLLSF AKAGAPVKRT LSLAELIRES ASFGLSGSNV RCEFSIPDGL
WLVDVDEGQI SRVITNLVIN ADQAMPEGGT IEVSAENAAF RTAENARLPL RPGKYVKISV
RDHGDGIPGE HLAKIFDPYF STKEKGTGLG LATVYSIVSK HGGCVDVESR PGIGSTFHFY
LPASRKQVVE GIETARRPLS GKGRILIMED GEEVRRILAE MLEHLGYEAD SVRNGAELIR
MYKESRAMGR HYDLVIMDLT VPGGMGARET ITQLKDLDPK ARAVVSSGYS NDPVMADFSD
YGFVDVISKP YKIEELSDLL KKVMRGKESK MLRFLAS
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