Gene Sfum_3496 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3496 
Symbol 
ID4458198 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4272022 
End bp4273182 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content59% 
IMG OID639704268 
ProductABC transporter related 
Protein accessionYP_847602 
Protein GI116750915 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.149399 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.134022 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTCC CGCCTGCCGC GCCCGCGTCG GACAGGCAGG GAGTCATCGT TGACGCAGGC 
GGAAAACCCG GTTTCCACAA GATGAATATC GAGCTGCGAG ATATCGTCAA GAGGTTTGGT
TCCCTGGAGG CGGTCAGCCA TGTGTCCCTC GATGTCCGGG ACGGGGAGCT TTTCACTCTG
CTGGGGCCCT CGGGTTGCGG CAAGACAACC ATTCTGCGTT TGGTCGGCGG TTTTCATAAC
CCGGATGCGG GAGCTGTTTT TTTCAACGAC AGGGATGTAA CGGGGATTCC GCCGTACGAG
AGAAACATCG GAATGGTTTT TCAGAATTAC GCTTTGTGGC CCCACATGAC CATTTTCGAT
AACGTCGCCT ACGGGCTGAA GATCAAGAAA GTCCCGAAGG GAAGCATCGG TGAAAGGGTC
TCCCGTGCCC TGGGTCTGGT CAACCTGGAG GGGCTCGAAA AACGCTATCC GGGCCAACTC
TCGGGTGGTC AGCAACAGCG CGTCGCGCTG GCTCGCGCCC TGGTTCTGAA CCCGGACGTC
CTCCTGCTGG ACGAACCCCT GAGCAATCTC GATGCCAAGA TTCGCCTGCA GGTGCGCGCG
GAGATTCGAA AGCTCCAGAA AGACCTGGCC ATCACCACGG TCTACGTGAC GCACGACCAG
GAAGAGGCCC TTACCCTCTC GGACCGGATT GCCGTGATCG ATAAGGGGAA ACTGCAGCAG
GTGGGCACGC CGTGGGATCT CTACGAGCGG CCGGCGAATG CCTTTGTGGC GGACTTCATC
GGGATCAACA ACCTGATCCC CGGCCAGGTG CGGGAAGCTG CCGGGGCGGG GGAAGAAATC
ACAGTGGGTA CGGAGGTCGG AATCTTTCTG TGCCGCTCCG ATGTAAGGCT GGAAACAGGG
GACCCGTGCG TGATTTGTGT GCGGCCGGAA ACGGCTTCCA TCGGAGAAAC GGAATCTGCC
CCGGAGGACG TCAACTCGAT GAGCGGCGCG GTCAGTTTTG CGTCTTTCAT AGGCAATGCC
GTTCGCTATG ACGTTGAAAT CGGGAGCGGC GCCATATTCA GGGTCGACGT TCAGAACCCC
CGAAACCACA AGCCTTACGC CATAGGCGAG AAAGTCCGGG TCTTCTTTTC GACGAAGACG
ACCCTGGCTA TTCCCGCGTG A
 
Protein sequence
MSLPPAAPAS DRQGVIVDAG GKPGFHKMNI ELRDIVKRFG SLEAVSHVSL DVRDGELFTL 
LGPSGCGKTT ILRLVGGFHN PDAGAVFFND RDVTGIPPYE RNIGMVFQNY ALWPHMTIFD
NVAYGLKIKK VPKGSIGERV SRALGLVNLE GLEKRYPGQL SGGQQQRVAL ARALVLNPDV
LLLDEPLSNL DAKIRLQVRA EIRKLQKDLA ITTVYVTHDQ EEALTLSDRI AVIDKGKLQQ
VGTPWDLYER PANAFVADFI GINNLIPGQV REAAGAGEEI TVGTEVGIFL CRSDVRLETG
DPCVICVRPE TASIGETESA PEDVNSMSGA VSFASFIGNA VRYDVEIGSG AIFRVDVQNP
RNHKPYAIGE KVRVFFSTKT TLAIPA