Gene Sfum_3480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3480 
Symbol 
ID4458217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4252341 
End bp4253321 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content57% 
IMG OID639704252 
ProductPpiC-type peptidyl-prolyl cis-trans isomerase 
Protein accessionYP_847586 
Protein GI116750899 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.240532 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.151496 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGATGG CGGGTTGTGT TCTGTTGGTG TTGTTCTGCG TCATTGCGGC GTCGGGCAGG 
TGCGCTGCGG ACTCCTTGGA CCGTATCGTC GCGGTGGTGA ACGGCGAAAT CATTCTTTAC
AGCGAGTTGC AGGAGCGGTT GCAACTCGTT CAAAAGAGCC TTCCTGAAAC GAGAACGAAC
GATCCCGCCC GCAAGGCCGC GATCGAACGG GAGCTGTTGC AGCAGATGAC GCGCGAGAAG
CTCACCGAGC AGGAAGCAAA GCGTCTCAAG ATCACCGTGA CCAAGAAAGA CGTGGATGAG
GCCATCGCCT TTGTGATGGC GGACCACAAT GTCAGCCAGG CCCAGATGGA GGCGAGGCTC
AAGGAGAGCG GCCAGTCCAT GGAGGAGTTT CGTAAGGTGC TCACAAAAGA TCTGGAGCGG
GACCGCCTTC TGGAAAGAGT GCTCAAGTCC AAAATCCTTA TTTCCGAAAA GCAGATTGAT
GCTTTTTTGA GCCAATCGCC GCCGGAAGTC AGAGTGGAGC CCCGAGGCAA GGAAGAGTAC
CGGCTGGGGA TCATTTTCCT TCCCGCCTCC GACGGGGCTG AGGGCAAACA GGCGGAAAAG
CGGGCGCGGG AGATTCGGGA GAAGTTGAAA GCGGGCGAGG ATTTCGCTGC AATGGCCAGG
CAATACTCCA AGGGACCGGC CGCACAGGAC GGCGGAGACG TGGGGTTCGT CAGCCTTGAC
GAACTTGCCC CTTTTATCGC GAAGAACGTA AAGGATCTGA AGATAAATCA GCCGTCGGAT
GTTGTGAAAG GCGGGGACGG GTATTACATC TTCCTGGTTA CCGATGTTCG CAGGGCGGAA
ATGCAGGCCG CTCAAAATTC CCCGGCGACA AACATGCGCG AGAGGGCCCG CAGGCAGCTC
TACCAACAGG AGATGGCGCG CAGGTTCGAT GAATGGATCA AGGACCTGGA ATCACGGTCT
TTCGTAAAGA TCTCACTCTA A
 
Protein sequence
MRMAGCVLLV LFCVIAASGR CAADSLDRIV AVVNGEIILY SELQERLQLV QKSLPETRTN 
DPARKAAIER ELLQQMTREK LTEQEAKRLK ITVTKKDVDE AIAFVMADHN VSQAQMEARL
KESGQSMEEF RKVLTKDLER DRLLERVLKS KILISEKQID AFLSQSPPEV RVEPRGKEEY
RLGIIFLPAS DGAEGKQAEK RAREIREKLK AGEDFAAMAR QYSKGPAAQD GGDVGFVSLD
ELAPFIAKNV KDLKINQPSD VVKGGDGYYI FLVTDVRRAE MQAAQNSPAT NMRERARRQL
YQQEMARRFD EWIKDLESRS FVKISL