| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3479 |
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| Symbol | |
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| ID | 4458216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 4248742 |
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| End bp | 4252311 |
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| Gene Length | 3570 bp |
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| Protein Length | 1189 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639704251 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_847585 |
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| Protein GI | 116750898 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.706369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.219385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCGATC AGAGATCGTA CGGGCCATCT GAGACGCTTT TTGGAGCGGA ATCGTTCAAG
ACCGATTCCA GGGAGATACT GGCCTTTCTG GGGGAATCGC GGGAATCGGC CGTTCTGAGA
GGGGCTCAGA AACCGGCGGT GGCCTATCTT CTCGCCAGGG GAATGGCGAC GCTCAAGAGG
CCGTTCCTGC TGGTCACCCC CACGGACCGG GAAGCAGAAA GCTTTGCCGA GACAATAGCC
TTCTTTGCCG GGAATGACTT GCACCGGCAG GACGTTCCCG CGGACCGAAG AGTCTGGTGC
CTCCCTTCGC GCTCCGGCCA GAAATCCCAG TCCCTGGGTA AAATGGCGAC GATGGCGCGC
CGCATGGAAA CCCTTCATGC CTTCCGCGCG TCCATCGGGT CCAACGTGTT CGTGACTTCG
GCGGTGGCCC TGATGGAACG GCTGCTGCTG CCCGAGGTTC TCCTCGCGCA TTCCGACTAT
CGGGTCAAGG GGGAAACCGT CGAGCTCGAG ACGCTGTGCG CGACACTAGT GGAGCGTGGT
TACTATCGCG TGTCACTCGT GGAAGAATAC GGCGATTTCA GCATCCGGGG CGGAGTGTTG
GACGTCTACG CGCCGCTGTA CAGGTGGCCG CTGCGGCTCG AATTCTTCGG AGACGAGCTT
GAATCGATCC GGCTCTTCCA TCCGAGCACG CAGCGGTCCA TGGGGATTCT GGAAGATGCC
GTCCTGCTTC CCGCAAGCGA AGTCATCCTG GATGTTTCCG CCAGGGAACG CGCCCGGGAG
GCCGTCTACG CAGACGTGCG GGAGGGACGC CTCACGCCGG CGGCCGGTAA TGTCTGGCTG
GACAAGCTTC AGGAAGGACA CCAGTTCGGG GCGTTTGAAT CGATCATGTC CGTCTTCTAC
GAGAAGACGG TGACCGTGTG GAATTACCTG GACCCGGCGA CGGTTGTGGT CTGGTCGGAT
GCCTTGCAGA TCAGAAAGAT CATGGAGGAA TTCTTCCTTC ATGCCAGCCG GGATTGGAAC
GAGAACCATT CGCCCCATGA ATGGAGGAGG CCTCCGTCGG AGCTGCTGGA GATTCCCGAG
CGGTTGATCG CCGACGGGGA GAGTTTTCAG CAGTTGATCG TCAATTCCCT GTCGGGCGGG
ACCGAGCCTC GCGCGGTTTT TGACATGGGG ACGTCGGGTC ACGAGCAGCT TGCTTTGAGC
GTCAGGGCGC ATGCCGAGAA AGAGCGATTG CTCGAGCCTC TGGCCAGGCA GTTCCAACGG
TGGAGGGAAG AGGGCATTTT GTCTTTCCTC GTCTGCCGTC AGAAAGAGCA GGCGGGGAGA
CTGAGCGAAC TGCTCGAGGG GCACGGCACG GATACCGTTC TCACCCTGCT TCCTTTCGGA
GCGGAATCGT ATGAGGCGCC GGCCGTCAAG GTGATTGTGG GCTCCCTGGA CCGCGGGTTC
GTGTGGCCCG CGGAACGGCT GGCCGTGGTG GCGGAAGAGG AGATCTTCGG GAAACGAACG
CGCCGCCGGT CCGGGAAGAG CGTTTCCGGG CTCTTTCTGA GTTCCTTTCA GGATCTGCAC
ATCGGCGATT TCGTGGTGCA TGTGGATCAT GGGATCGGAG TCTACAAGGA ACTGGTGCAC
CTTGCCGTTC GGGGAATCGA AAGCGACTTC CTGCTGCTCG AATACCAGGA TGGCGACCGG
CTCTATGTTC CCGTCGACAA GCTGCAGAAG GTTCAGAAGT ATCTCGGGCT GGAAGGGCAG
CAGCCCAAGA TCGACAAGCT GGGCGGCAGG TCCTGGGAGA CGGCCAAAAA GAAGGCGCTG
GAATCGGCGG AGCGTGTCGC CGAGGAACTG CTGAGCCTGT ATGCAAAGCG ACAGATCGGC
GAGGGCTTCC GGTTCTCTCC GCCGGACAGC TATTTTCAGA AGTTCGAAGC GACTTTCTCA
TACGAAGAGA CTCCGGATCA GATGAGGGCC ATCGACGACG TTCTGGATGA CATGGCATCC
AGGCGTCCGA TGGATCGCCT GATCTGCGGG GATGTGGGTT ACGGGAAGAC GGAAGTGGCT
CTGCGTGCCG CCTTCAAGGC CGTGATGGAC GGCAAGCAGG TGGCGATGCT GGTGCCGACC
ACGGTGTTGG CCGAGCAGCA TTACCAGAGT TTCACCGAGC GATTCGAAGG CTTTCCGGTC
GTTGTGGAAA CTCTGAGCCG GTTCAAGACC CCGGCACAGC AGACGCTGGT CCTGAAGGGG
CTAAAGAACG GCACGGTCGA CGTCGTGGTG GGCACCCACC GGTTGCTGCA GTCCGACGTT
GCCTTCAGGG ACCTGGGCTT GCTGGTCATT GATGAAGAGC ACCGTTTCGG TGTGAAACAC
AAGGAGCGGA TGAAGGAAAT GCGGGTATCC GTGGACGTTC TGACGCTCAC GGCGACCCCC
ATCCCCCGTA CTCTGCATAT GGCCCTGGCG GGCATCCGTG ACCTGAGCAC CATAGAGACG
CCCCCCCAGG ACCGGCACGC CATCGAAACG TTTATCTGCA AGTACGACGA GTTCACCATT
CGGGAGGCGG TGTATCGGGA GTTGCGGCGC AGCGGGCAGG TCTTCTTCGT TCACAACCAC
GTTCAGAGCA TCTACCAGAC GGCAAATGCC ATTGGCCGGC TGATTCCCGA AGCGAAGATA
GCGGTTGCCC ACGGACAGAT GAAAGAGCGG GACCTGGAAA AGGTGATGCT GGATTTCATC
CGCAGAAAGA TCGACGTCCT GGTTTGCACC ACAATCATCG AGTCGGGCCT GGACATTCCC
GCGGCGAACA CCATCATCAT CAACCGCGCC GACAAGTTCG GCCTTGCCCA GATCTACCAG
CTGCGGGGAC GAGTGGGGCG GTCGAGCGAA CAGGCCTTCG CCTACCTGCT CATTCCCGGA
GAACATCTCA TCAGTCGGGA TGCTCAGAAA CGGTTGAGGG CCCTGCTCGA TTTCAGTGAG
CTGGGCGCGG GATTCAAGAT AGCCCTCAAC GATCTGCAGA TCCGCGGAGG CGGAACGATC
CTGGGTTCCT CCCAGTCGGG GCACATTGCC GCGGTGGGCT ATGAGCTCTA CCTCGAGCTT
CTCGAGAAGA CGATCAAGGA AATGAAGGGA GAAGAGCGCG AAACGGAGTC CATTGACCCC
GAGATCAACG TGCCCCTTTC GGCCTTTCTG CCGGAGACCT TCATTCCCGA CAAGGACCAG
AGGCTCATTG CCTACAAGAG GCTCGCCACG CTGGCGGAAC CGGCGGCGGT GGACGATCTG
GCCGGCGAAT GGCGAGACCG TTACGGACCC TTTCCGGAGG GTGCCAGGAA CCTGGTCATG
CTGGCCAAGA TGCGCCTGCT CTTCAAACGT CTGGGGGTGG TCCGCCTGGA CAGGGACAAG
GATTTTTTCT CCCTGCATTT TGCGCCGCGA GTCAGCGTCG ATCGGGTTGC GGCATTCCTT
GGGGAGAAGA AATGCACTTT CGTGGTCGAA ACGGACCGCA GGGTGAAGGT GGAGATTTGG
GGTCGGCATT TGGCTCAGCA GGTTCTGCGC CTGAAAAGAA TCTTGCAAGA GCTTGCCGAA
CGTGATAGTG ATATCAAGTC AAATCGATAG
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| Protein sequence | MRDQRSYGPS ETLFGAESFK TDSREILAFL GESRESAVLR GAQKPAVAYL LARGMATLKR
PFLLVTPTDR EAESFAETIA FFAGNDLHRQ DVPADRRVWC LPSRSGQKSQ SLGKMATMAR
RMETLHAFRA SIGSNVFVTS AVALMERLLL PEVLLAHSDY RVKGETVELE TLCATLVERG
YYRVSLVEEY GDFSIRGGVL DVYAPLYRWP LRLEFFGDEL ESIRLFHPST QRSMGILEDA
VLLPASEVIL DVSARERARE AVYADVREGR LTPAAGNVWL DKLQEGHQFG AFESIMSVFY
EKTVTVWNYL DPATVVVWSD ALQIRKIMEE FFLHASRDWN ENHSPHEWRR PPSELLEIPE
RLIADGESFQ QLIVNSLSGG TEPRAVFDMG TSGHEQLALS VRAHAEKERL LEPLARQFQR
WREEGILSFL VCRQKEQAGR LSELLEGHGT DTVLTLLPFG AESYEAPAVK VIVGSLDRGF
VWPAERLAVV AEEEIFGKRT RRRSGKSVSG LFLSSFQDLH IGDFVVHVDH GIGVYKELVH
LAVRGIESDF LLLEYQDGDR LYVPVDKLQK VQKYLGLEGQ QPKIDKLGGR SWETAKKKAL
ESAERVAEEL LSLYAKRQIG EGFRFSPPDS YFQKFEATFS YEETPDQMRA IDDVLDDMAS
RRPMDRLICG DVGYGKTEVA LRAAFKAVMD GKQVAMLVPT TVLAEQHYQS FTERFEGFPV
VVETLSRFKT PAQQTLVLKG LKNGTVDVVV GTHRLLQSDV AFRDLGLLVI DEEHRFGVKH
KERMKEMRVS VDVLTLTATP IPRTLHMALA GIRDLSTIET PPQDRHAIET FICKYDEFTI
REAVYRELRR SGQVFFVHNH VQSIYQTANA IGRLIPEAKI AVAHGQMKER DLEKVMLDFI
RRKIDVLVCT TIIESGLDIP AANTIIINRA DKFGLAQIYQ LRGRVGRSSE QAFAYLLIPG
EHLISRDAQK RLRALLDFSE LGAGFKIALN DLQIRGGGTI LGSSQSGHIA AVGYELYLEL
LEKTIKEMKG EERETESIDP EINVPLSAFL PETFIPDKDQ RLIAYKRLAT LAEPAAVDDL
AGEWRDRYGP FPEGARNLVM LAKMRLLFKR LGVVRLDRDK DFFSLHFAPR VSVDRVAAFL
GEKKCTFVVE TDRRVKVEIW GRHLAQQVLR LKRILQELAE RDSDIKSNR
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