Gene Sfum_3477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3477 
Symbol 
ID4458214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4246870 
End bp4248291 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content62% 
IMG OID639704249 
ProductL-seryl-tRNA selenium transferase 
Protein accessionYP_847583 
Protein GI116750896 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] 
TIGRFAM ID[TIGR00474] seryl-tRNA(sec) selenium transferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.213454 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.293917 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAAGA CTTCCATGCA AGATTTGCTT CGCCGTCTCC CGAGCGTCGA TGCCCTGCTG 
CAGGCGGATG CCGTCCGCGA GGCCCTGGAC CGACATCCCC GCAGACTGGT CCTTGACTGT
ATTCGCCAGG TTCTGGAAAC AACCCGACAA CGGCTGATCG AGGGGGCTCC GGGCGACGCC
CCGGGAGAAC CGGAGCACGC GACCCTGGTG CAGGCCATCC TGGAGCGGAT CGAAGCCGCC
GGCAGCTTTA CGCTCCGCAA TGTAGTCAAC GCCACGGGCA TCATCGTTCA TACCAACCTC
GGCCGATCCC TGCTTCCGCG GGAAGCGGTC GAGCGGCTCC AGCTCATCTG CCGGACCTAC
AACAACCTCG AATACAATCT CGAGCTCGGC CGTAGAGGAT CGCGGTACGT TCACGCGGAA
TCGATTCTGT GTGAATTGAC CGGAGCGGAA AGCGCCCTGG TGGTCAACAA CAACGCCGGA
GCCGTCTTCC TGGTGCTGAA TACCCTCGCG AAGGACATGG AGGTCATCGT CTCCCGCGGA
CAGCTGGTGG AAATCGGCGG TTCCTTCCGG ATTCCGGACG TCATGCGCTC GAGCGGCGCC
CTCCTGCGCG AAGTCGGATG CACCAACCGG ACGCATCCCC ATGATTTCGT TTCGGCGATC
AACGACCGCA CCGCCCTGCT GATGAGAGTG CACACCAGCA ATTACCGGAT CCTCGGGTTC
ACCGCCGAAG TGTCTCTCGA AGAAATGGTG TCCATGGGAA GAGCGCACGG ATTGCCCGTT
GTGGAAGATC TCGGCAGCGG TTCCCTCATC GACCTGTCCA GGTATGGGCT GACGGGGGAA
CCCACGGTTC GGGAGGCCGT CCGCAACGGA GCGGACGTCG TGACCTTCAG TGGCGACAAG
CTCCTGGGGG GACCTCAGGC GGGCGTCATC CTGGGGAGGA AGGACCTCAT CGATCGGTGC
AAGAAGAACC CCATCACCCG TGCACTGCGA GTGGACAAGC TCACTCTGGC CGCGCTCGAG
GCGACCCTCC GCCTGTATCG CGACGAAAAT CGGGCCATTG AGCGCATCCC CGTCCTCAGA
ATGATCGCGC TGTCCACGGA TGCGCTCAAC GATACCGCAC AAGCGCTTTG TTCCCTGATT
CGGCAAATCG ACACGCAACA GCGGCTTGTC GTCGAAGTCC GGAGCAGCTC TTCCCAGGTC
GGCGGGGGCT CGCTCCCTGC CCAGAATCTT CCCACACGGG TGGTAACCGT CCACGGGACG
GAGATCTCCG CCCAAAAGAT CGAGGGTTTC CTGAGAAACA ACGACCCGCC GATCATCGGT
CGAATCGAAT CCGATCAATT CCTGATGGAT ACGCGAACAC TGTTGCCGGA CGATCTTCAC
ACCATCGGCA ATGCGTTCGC GCGGTTGCTG TGCAGCCCGT AG
 
Protein sequence
MSKTSMQDLL RRLPSVDALL QADAVREALD RHPRRLVLDC IRQVLETTRQ RLIEGAPGDA 
PGEPEHATLV QAILERIEAA GSFTLRNVVN ATGIIVHTNL GRSLLPREAV ERLQLICRTY
NNLEYNLELG RRGSRYVHAE SILCELTGAE SALVVNNNAG AVFLVLNTLA KDMEVIVSRG
QLVEIGGSFR IPDVMRSSGA LLREVGCTNR THPHDFVSAI NDRTALLMRV HTSNYRILGF
TAEVSLEEMV SMGRAHGLPV VEDLGSGSLI DLSRYGLTGE PTVREAVRNG ADVVTFSGDK
LLGGPQAGVI LGRKDLIDRC KKNPITRALR VDKLTLAALE ATLRLYRDEN RAIERIPVLR
MIALSTDALN DTAQALCSLI RQIDTQQRLV VEVRSSSSQV GGGSLPAQNL PTRVVTVHGT
EISAQKIEGF LRNNDPPIIG RIESDQFLMD TRTLLPDDLH TIGNAFARLL CSP