Gene Sfum_3396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3396 
Symbol 
ID4458302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4163489 
End bp4164205 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content62% 
IMG OID639704168 
ProductABC transporter related 
Protein accessionYP_847504 
Protein GI116750817 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0282544 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGAAC CGCTGTTGCA GGTCAAGGCG ATCAAGGTCC GTTATTCGGG ACTGCCCGTC 
ATCCACGGCG TTTCCCTGGA GGTGTATCCC GGGGAAACGG TTTGCGTGGT GGGCTCGAAC
GGCGCCGGGA AATCGACCAT TTTGAGGGCG GTGATGGCGG CGCAGAGGGC CTTCGAGGGC
GAAATCCGGT TCGGCGGCGT CGCGATCCAC GATAAGCGGA CCGAGGCCAT CGTTCGACTC
GGCGTCGTTT ACGTCCCGGA GGAAAAGATG CTCTTTCGAC CGCTCTCCGT CGAGGAAAAC
CTGCTCCTTG GCGCCTACTG CCTCGAGGAC CGGCAGCGCA TCGCGGAAAA CCTGGAATTC
GTGTTCACAC TCTTTCCGCG CTTGCGGGAG CGGCGCCGGC AGGCCGCATC CACCCTCTCC
GGAGGCGAAC AGCAGATGGT CGCGGTCGGC AGAGGACTCA TGTCGAACCC CAGGATCCTC
ATGCTCGACG AGCCATCGCT GGGACTCTCG CCGTTGCTCG TGGACGAGCT CTTCGACGCG
ATCGTGAAGC TCAAGAAGGA AGGTCTCACC ATTCTGCTCG TCGAACAGAA CGTGAGGGAA
TCCCTCGAGA TGAGTGATCG GGGCTACGTC CTGCAGACGG GAAAGGTGGT GCAGGAAGGC
TCAGGCGCCG AACTGCTGCA AGACGACAGC GTCCGGAAGG CGTTCCTGGG GTTGTGA
 
Protein sequence
MPEPLLQVKA IKVRYSGLPV IHGVSLEVYP GETVCVVGSN GAGKSTILRA VMAAQRAFEG 
EIRFGGVAIH DKRTEAIVRL GVVYVPEEKM LFRPLSVEEN LLLGAYCLED RQRIAENLEF
VFTLFPRLRE RRRQAASTLS GGEQQMVAVG RGLMSNPRIL MLDEPSLGLS PLLVDELFDA
IVKLKKEGLT ILLVEQNVRE SLEMSDRGYV LQTGKVVQEG SGAELLQDDS VRKAFLGL