Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3360 |
Symbol | |
ID | 4457642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 4116263 |
End bp | 4118191 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639704132 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_847468 |
Protein GI | 116750781 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATACAGC AATTGCGGAA TCCGAAATTT TACTCAATGC TCATCATTGA CGCATTTCTT TTCGCCGTGG CCTATTACGG AGCCTACCTG CTCCGCTTTG AATTCACTCT GCCTCCCAAT CACCTGCCCC TCATCAATGC TCTCGTTCCT TGGGTCGTCG GCATGAAGCT GGGCGTTTTC TGCCTGTTCG GCCTCTACAG GGGGATGTGG CGGTTTTCGG GACTGGAGGA TTTCTGGCGT CTGGGACAGG CGTCCGTTCT TTCCATGCTT CTGATTGTCG CTACGGTGGC TTACACTGAC AACTTCACCG GATATCCCCG ATCCGTCTTT CTTCTGGACT GCGTTTTGAC GTTTCTGCTG ACCGGCGGTC TGCGTGTATG CATTCGGTCC TACTATATCG CCAGGAATAC GCCGCGGGGG ATCCGGGCAT TCTCCCTGCC CAGGCTGAAT TACGTTGAGA AAGAGCGCAA GCAGATTCTC ATCATCGGCG CCGGCGGGTC GGGAGAAAAG ATGCTCCGCG AGATCTTCGA CAATCCGCAG CTCCATTATC ACGTGGTCGG GTTCCTGGAC GACGATCCGG GCAAGCGGGG CCGCACGGTG CATGGGGTGC GGGTACTCGG GCCCGCGGAC CATTTGTCCA GAGTCCTGGA GCAGAACAAT ATCGAACAGG TATTTATCTC GGTACCTTCC GCGACCGGAG CTCAGATGCG CCGGCTCATC GATATCTGCA AGGGATGCGG GATTTCCTAC AAGACGCTTC CCGCCATCGG TTCGATCATG AACGGCAACG TGAGCATCAA GTCTCTGCGG GACGTCAATT ACGAGGATTT GCTGCGCCGT CCTCCGGTCA GCCTGGAAAC CGATGCCATC TCAGGCTACC TGACCAACCG CACGGTAATG GTGACGGGGG CGGGCGGGTC CATCGGCTCC GAACTCTGCC GCCAGGTCGC CCAGTTCAAG CCGCAGTTGC TGATCCTGGT CGATGCCAGC GAGTCCAACC TGTTCCATAT GCAGATGGAA TTGCAGCATG AGAGGGAATT TCGCAACTAT CAGTGTATCT TGGGTCAGGT GCAGCAGCGT CTGCTGATGG AGAGCGTGTT CCGGAAGTAC CGCCCGGACG TGGTGTTCCA CGCCGCGGCT TACAAGCACG TCCCGATGCT GGAAAGGAAT CCCTGGGAAG CCGTGTTCAA CAACGTGCGC GGCAGCCAGG TAATGATGAA GCTGTCCAAG GATTACGGGG TGAAACGTTT CGTCCTGGTT TCCACCGACA AGGCGGTCCG GCCGACGAAC GTGATGGGAA CCAGCAAGCG CCTCACGGAG CTCATCCTGC AGTCCTTTCA GGGCAATGGG ACAAAGTACA TGGCCGTGCG ATTCGGCAAT GTGGTCGGGT CCTCGGGTTC CGTCATTCCC CTCTTCCGCC GCCAGATCGA GCAGGGAGGC CCGGTCACCG TGACTCATCC CGAGGTCACC CGGTACTTCA TGACGATTCC CGAAGCGGCT CAACTCATCC TGCAGGCCGG AGCGCTCGGG GAAGGCGGAG AAATCTTCAT CCTGGAAATG GGAACCCCGG TAAAGATCGC GGACATGGCA CAGGACCTGA TCCGGTTGTC GGGGAAGCAA CCGGGCAGGG ACATTGAAAT CCAGTTCACC GGCCTGCGAG AGGGCGAGAA GCTTTACGAA GAGCTGATCA CCCTCGATGA AGGCATCGTA AACACCAGGC ACGAAAAGAT CCTGGTGCTG CGCCCCAACG GAAATGGAAA CGGCAACGGC CATCATGCGG GAAACCACGA TGCTTTTCGG CAGTGGCTGG ATCGGGAATT GGAAGAGCTT TGCGCCATTG CGCGCAAGCA TGACTCATAC GCCATCAAGC GCAAGCTCAA GCAACTGGTT CCGGAATACA CCCCCCAGGA TGCGGAGTGC GTCCTGTAA
|
Protein sequence | MIQQLRNPKF YSMLIIDAFL FAVAYYGAYL LRFEFTLPPN HLPLINALVP WVVGMKLGVF CLFGLYRGMW RFSGLEDFWR LGQASVLSML LIVATVAYTD NFTGYPRSVF LLDCVLTFLL TGGLRVCIRS YYIARNTPRG IRAFSLPRLN YVEKERKQIL IIGAGGSGEK MLREIFDNPQ LHYHVVGFLD DDPGKRGRTV HGVRVLGPAD HLSRVLEQNN IEQVFISVPS ATGAQMRRLI DICKGCGISY KTLPAIGSIM NGNVSIKSLR DVNYEDLLRR PPVSLETDAI SGYLTNRTVM VTGAGGSIGS ELCRQVAQFK PQLLILVDAS ESNLFHMQME LQHEREFRNY QCILGQVQQR LLMESVFRKY RPDVVFHAAA YKHVPMLERN PWEAVFNNVR GSQVMMKLSK DYGVKRFVLV STDKAVRPTN VMGTSKRLTE LILQSFQGNG TKYMAVRFGN VVGSSGSVIP LFRRQIEQGG PVTVTHPEVT RYFMTIPEAA QLILQAGALG EGGEIFILEM GTPVKIADMA QDLIRLSGKQ PGRDIEIQFT GLREGEKLYE ELITLDEGIV NTRHEKILVL RPNGNGNGNG HHAGNHDAFR QWLDRELEEL CAIARKHDSY AIKRKLKQLV PEYTPQDAEC VL
|
| |