Gene Sfum_3354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3354 
Symbol 
ID4457636 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4109774 
End bp4111009 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content65% 
IMG OID639704126 
ProductABC transporter related 
Protein accessionYP_847462 
Protein GI116750775 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGACG TCGTCATATC GGTAGAAGGT CTCGGGAAGA AATACCGGAT CCGCCATGCG 
CGGGTGGGGC GATACCGGAC GTTCCGCGAG GCTCTGGCTC AGGGAGCGGG CAGGCCTTTC
CGGGCATTGC GCAGGGCGCT GGGCGCGCGG TCATTGGGCG GGGAAACGCC CGCCGGCGGC
GGCGAACGCC CCTCTTCGGA GGATTTTTGG GCCTTGGAGG ACGTCGGCTT CGAGGTGCGT
CGGGGCGACG TCGTGGGCAT CATCGGCCGC AACGGGGCGG GCAAGAGCAC GCTGCTCAAG
ATTCTGAGCC GCATCACCGA ACCGACGGCG GGCCGCGTGC GACTGCGGGG GCGCGTGGGG
AGCCTGCTCG AAGTCGGCAC GGGATTTCAC CCGGAACTGA GCGGCCGTGA AAACATCTTC
ATGAACGGGG CGATCCTCGG CATGACCAGG GCCGAGATCA CCCGCAAGTT CGATGAAATC
GTGGCTTTCG CCGAGATCGA GAAGTTCCTG GACACCCCGG TCAAACGTTA TTCGAGCGGC
ATGTACGTCC GTCTTGCCTT CGCCGTGGCC GCGCACCTCG ACCCCGAGAT CCTGCTGGTG
GACGAGGTGC TCGCGGTGGG GGACGTCCAG TTCCAGCAGA AATGCCTGGG CAAGATGAGC
GAAGTGAGCC GGAGAGGCCG GACGGTGTTG TTCGTGAGCC ATAACATGGC GGCGGTGAAC
GCGTTGTGCG CGAGGGGGAT ACTCCTGTCG CGCGGCCGCG TCGCCGAGGA CGGGCCGGTG
TCCGGGGTCG TGGCGGCTTA CCTGGCCGAT TCCGTCAAGG ATCGCGTGAA CCTGGAGACG
GGCCCCTTGA AGTGGGTGGC CGCCAGGCAG ACGATGACGG GTCTGGAGAT CTCCGCGGAA
TACGCCTTCG ACCGGCCGGT ATCTCTCCCG TGCCTGGGAT TCGTCATCAG CGACCATTAC
GGAAACCCCA TCTTCGGTTG CAACCCGAAG ATGTCCCACA TTCACAGCCT GGAAAACCCC
GTCTCGGCGG GCAGCGTCAC GGCCAGCATC CGCTCCCCCG AGTTGCGCAA CGGGACCTAC
AGAATGTCCA TATGGTTCGG CGACGGCAAG GTCAACTCGG TGGTGATCAG GGACTGCCTG
ACGTTCGACG TTACGAACCT GGCGGAAACC GGTAATCACA GCGCGGCCGT CAACGGCCCG
GTCATCGCCC GCTGCGAGTG GGACTTCAGC GGGTGA
 
Protein sequence
MSDVVISVEG LGKKYRIRHA RVGRYRTFRE ALAQGAGRPF RALRRALGAR SLGGETPAGG 
GERPSSEDFW ALEDVGFEVR RGDVVGIIGR NGAGKSTLLK ILSRITEPTA GRVRLRGRVG
SLLEVGTGFH PELSGRENIF MNGAILGMTR AEITRKFDEI VAFAEIEKFL DTPVKRYSSG
MYVRLAFAVA AHLDPEILLV DEVLAVGDVQ FQQKCLGKMS EVSRRGRTVL FVSHNMAAVN
ALCARGILLS RGRVAEDGPV SGVVAAYLAD SVKDRVNLET GPLKWVAARQ TMTGLEISAE
YAFDRPVSLP CLGFVISDHY GNPIFGCNPK MSHIHSLENP VSAGSVTASI RSPELRNGTY
RMSIWFGDGK VNSVVIRDCL TFDVTNLAET GNHSAAVNGP VIARCEWDFS G