Gene Sfum_3317 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3317 
Symbol 
ID4458345 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4059195 
End bp4060775 
Gene Length1581 bp 
Protein Length526 aa 
Translation table11 
GC content59% 
IMG OID639704089 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_847425 
Protein GI116750738 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.135478 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCGCC CTGAAACCAT GAACGACGCC TTCGAAGCAT CTCGATCGAA CAAGTGGGCC 
ATCGCCTTGA CGGTGATGCT GCCGACCTTC ATCGAGGTGA TGGACACGAG CGTCGTCAAC
GTTTCGCTGC CGCACATCCA GGGCAGCCTG AATGCCGGCG TGGATGAGTC GACCTGGGTA
CTGACCTCCT ACCTGGTGTC CAACGCGATC ATCATTCCCA TAACGGGTTG GCTGGCAAGC
GTGTTCGGGC GCAAGCGCTA CCTGATCTTC TCCGTGGTCA TCTTCACGCT CAGCTCCCTG
TTTTGCGGCG CCGCGCCCTC CCTGGAAGTG CTGATTCTTT GCAGAATCCT GCAGGGGTTG
GGTGGAGGCG GGCTGCAGCC GCTGTCTCAG GCCATTCTGC TGGAATCGTT TTCTCCAAAG
GAGCACGGCA TCGCCATGGC GGCTTTCGGG ATGGGGGTTG TGCTGGCTCC CATACTGGGG
CCCGTTCTCG GGGGCTGGAT AACGGACAAC TGGAGCTGGC GGTGGGTGTT CTACATCAAC
CTTCCGGCGG GGATCCTGGC GCTATTCCTG GTGGTGCTCT TCATCCAGGA TCCGCCCTAT
CTGCGCCGAA CCCAGTTCAG AATGGACACC TGGGGGCTTT TTCTGTTGAC CGTCGGGCTC
GGTTGCCTGC AGATCGTTCT GGACAAGGGT GAACGCGAAG ACTGGTTCAA TTCGCATTTC
ATCGTGGTCC TCAGCATCGC TGCCGCGCTC TCGCTGGTTT TGTTCGTCAT CGTGGAACTC
AACGCCGAAC ATCCCGTGGT GAACCTCAGG GTCTTGCGAG ACCGGAGTTT CGCGGCCGGG
ACCGTTATCA TGTTTTTCGG ATTCTTCTGC CTGTTCGGGA GCATCGTGCT GTTGCCCCTC
TACCTGCAGC AACTCATGGG CTACACGGCG CTTTGGGCCG GGCTGGTGCT GGGACCGGGA
GGGTTCGCCA GCTTTTTCAT CATGCCCGTT GTCGGCGTTC TGCTTAAAAA AGGCGTGAAG
CCCCGGTACC TGCTGTCCAT CGGACTAGTG GCGACCGCTT TGTCCACGTG GATGATGTCC
GGTTTCAATC TCGAGGCGGA TTTCTACACC GTCGCATGGC CGCGCTTCGT GCAGGGATTC
GGGATGGGGC TGTTCTTCGT ACCCCTGGCC GCAGCGGCCT ATGTGAACAT TTCCAGGGAG
GAGATGGGGA ATGCGTCGGG CATCTTCAAC CTGTTGCGCA ACCTTGGGGG CAGCTTCGGC
GTGGCGTTCA GCACGACCGT GCTGTCACAG AGGTCGCAAT TGCACCAGAC GCATCTTTCG
GAGTACATTA CTCCCTTCAA TGCCGCCTTT CAGACCTACT TCGATCAGGT CTGCTCATGG
CTGCAGATGA ATCAGCCGCA GGCATCCTGC CCGACGGGGG GGCTTGTGAT GACCTACAGG
GAAGTTCTGC GCCAGGCCAG TATGCTGGCT TTCAACGATA CTTTTCTGTT GCTCGCCATC
GCCACCTTAA GCCTACTGGC GCTCATGCCG CTGCTCAAGA AATCCGCCAG GCCTTTCGGG
TGGAAGGAGG GCGTGCATTG A
 
Protein sequence
MRRPETMNDA FEASRSNKWA IALTVMLPTF IEVMDTSVVN VSLPHIQGSL NAGVDESTWV 
LTSYLVSNAI IIPITGWLAS VFGRKRYLIF SVVIFTLSSL FCGAAPSLEV LILCRILQGL
GGGGLQPLSQ AILLESFSPK EHGIAMAAFG MGVVLAPILG PVLGGWITDN WSWRWVFYIN
LPAGILALFL VVLFIQDPPY LRRTQFRMDT WGLFLLTVGL GCLQIVLDKG EREDWFNSHF
IVVLSIAAAL SLVLFVIVEL NAEHPVVNLR VLRDRSFAAG TVIMFFGFFC LFGSIVLLPL
YLQQLMGYTA LWAGLVLGPG GFASFFIMPV VGVLLKKGVK PRYLLSIGLV ATALSTWMMS
GFNLEADFYT VAWPRFVQGF GMGLFFVPLA AAAYVNISRE EMGNASGIFN LLRNLGGSFG
VAFSTTVLSQ RSQLHQTHLS EYITPFNAAF QTYFDQVCSW LQMNQPQASC PTGGLVMTYR
EVLRQASMLA FNDTFLLLAI ATLSLLALMP LLKKSARPFG WKEGVH