Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3269 |
Symbol | |
ID | 4458402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 4004010 |
End bp | 4005869 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639704041 |
Product | sensor protein |
Protein accession | YP_847377 |
Protein GI | 116750690 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAAAAGG CACTTCCGGT GAACAGCCTG CAAGTCAAAT TGATGCTGCT TTTCTTCGTG TTCGCGCTGG TGCCGCTTTG CGCGGTCGGA ATGCTTTCCA TCCGGACGGC GGAGGAGCTC ATCCTGAATA TGGCCACGAA CCAGATCGGG CAAGTGGCGG TGGACAAGGC CGCGCTGCTC GGGCGGTGGA TTTCCGAACG CAAGGCCGAC CTTGAAGTCA TGGCGGGTTC GTCGGTCCTG AGGTCCATGG AGCCGGAACA GATCGTTCCC TACTTGGAGT TGGTGAGAAA TAAGTACAGA GTGTACGATG AAATTGCGGT GCAGACCCTC CAGGGCCATA CGATCTGTCG CGTCGGAGGA ACGGCGTCGG AGCTCCGGGT GGGAGATCGG GGAGTGGAGC CCGAAATCGC CGGGCTGAGC ATGCCCGCCA TTCAGTTGAG CTCCGACGGA AAGGAATCCT GCCTTCTCAT CTCGGCTCCG CTGATCGGAG AATCCGGAGA TCTGAAAGGC GTCGTCAGAG CATCCGTCGG GACCGGCACG ATTCTCGCTG TTGTGTTGCG GGTTTCGCTG GGGGAAACGG GGGAGTGCTA CCTCGTGGAC CGGGAAGGCA CATTTCTTGC CCACAAGGAG CCGCGGAGAA TACTCACTCA GAACATCGCC CAGTCGGAGA GCTTCAAGAA TATTCTCAGT GGCCGAAACC GCAGAATCAG TTACATCGAC TATCGGGGAA TCGAGGTCAT CGGGGCCTCG ATGATGGTAG GCGACACGGA CTGGGCCCTC GTGGTGGAGC AGGACAAGGC GGAGGCCTTC CATGCCGTCA ATGAACTGAG GCGCTTCGTG TTCCTCGTCA TCGCCACGGC CATCTTCGGC ACGCTGATTT CCGCGTGGTT GCTCTCGAGG TATGTTGCCA CTCCGATTCG AAGGCTGAGC ACGGCAGCCC GCTCTCTTGC CCGGGGAGAC TTCGAGAGGG TGGATATCGA GACAATGGAT CGCGGCGATG AGGTGGGGCT CCTCTACGAC GCCTTCGGTG AAATGGCGAG GCAGTTGAAG GACCGGCAGA ACAGGCTGGA GGAGAAAGTC ACCCGCAGTG AAGCGGAGCT CAAGGAAACG GACGTAAGGC TGAAGCGGAC CCAGGCGGCG GTTGCCCGCT CACAGCAGCT GGCGTCCCTG GGGCAGCTTG CCGCCGGTGT CGCTCACGAG ATCAGGACGC CCCTCACATC GCTCAAAATG TTTCTGCAGT CCATTGAAAG CGAGCTGGAA ATATCTTTCG AGTACGAGGA AGACTTTCAG ATCGCCATGA CTCAAATATT GCGCATGGAG GCCACGATCA ACCGGTTCCT CGACTTTGCC AAGCCGCAGG CTCCGGTATT CACGGAAGTG GACGTCAAGG AACTGATTCA AGACGCTCTG CTGGTGGCGG GGCCGAGAGC AAAACAGCAG GAAACCGTGG TCCGGACCAG GATAGCCGAC TCACTTCCAC GGATCCGGGG GGATAGAAAG CAGCTTGGAG AAGCCCTTCT GAATCTCATG GTCAACGGGC TCGAGGCATT GAATGCAGGC GGAGAATTGA GTCTCCTCGC CGAACTGGAA CCGTCCGTGA CGGATAAAGG ATTGCGGGAG TATATCCGCA TCGACGTTGC GGACACCGGG CCGGGAATAC GGGAGGAGGC CATGCCGAGC CTTTTCGATC CCTTCTTCAC CACCAAGGCC ACCGGTACCG GGCTTGGTCT TTCCATCGTT GACGGCACGG TCAAGAGGCA TGGCGGGAGG ATCCGAGTGG AAAACGGCGT GGGCGGGGGT GCGACGTTCT CATTGCTCAT CCCGATTCGA GTGGAAGGAA TGCTTGAGAA AGATGGATAA
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Protein sequence | MKKALPVNSL QVKLMLLFFV FALVPLCAVG MLSIRTAEEL ILNMATNQIG QVAVDKAALL GRWISERKAD LEVMAGSSVL RSMEPEQIVP YLELVRNKYR VYDEIAVQTL QGHTICRVGG TASELRVGDR GVEPEIAGLS MPAIQLSSDG KESCLLISAP LIGESGDLKG VVRASVGTGT ILAVVLRVSL GETGECYLVD REGTFLAHKE PRRILTQNIA QSESFKNILS GRNRRISYID YRGIEVIGAS MMVGDTDWAL VVEQDKAEAF HAVNELRRFV FLVIATAIFG TLISAWLLSR YVATPIRRLS TAARSLARGD FERVDIETMD RGDEVGLLYD AFGEMARQLK DRQNRLEEKV TRSEAELKET DVRLKRTQAA VARSQQLASL GQLAAGVAHE IRTPLTSLKM FLQSIESELE ISFEYEEDFQ IAMTQILRME ATINRFLDFA KPQAPVFTEV DVKELIQDAL LVAGPRAKQQ ETVVRTRIAD SLPRIRGDRK QLGEALLNLM VNGLEALNAG GELSLLAELE PSVTDKGLRE YIRIDVADTG PGIREEAMPS LFDPFFTTKA TGTGLGLSIV DGTVKRHGGR IRVENGVGGG ATFSLLIPIR VEGMLEKDG
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