| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3228 |
|---|
| Symbol | |
|---|
| ID | 4458431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 3948684 |
|---|
| End bp | 3950165 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639704000 |
|---|
| Product | peptidase M16 domain-containing protein |
|---|
| Protein accession | YP_847336 |
|---|
| Protein GI | 116750649 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0612] Predicted Zn-dependent peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.966774 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTTCGA ACAGTCTGAA GCTGCTCTTG ACTGTGCTGC TGGCGACCGC GATCCATCAC
GGCGCTGGAG CGGCACCGGC CCGGGGCCAG GAAGGGGTTT CCGAGGCCCT GCTTTCCAAC
GGCATGAGGG TTATTCTCCA GGAAAACCAC CGCGCCCCGA TCGTGTCCTT CCAGGTATGG
TACCGGGCGG GCTCGCGCAA CGAACAATGG GGTAAGACGG GGCTCGCTCA CCTGTTCGAG
CACCTGATGT TCAAGGGGAC TCAAACCGTC TCCGGAAGCG AATTCAGCCG CAGAATCCAG
GAAAACGGGG CCGAATTCAA CGCCTTCACT TCCAGCGATT ACGCGGCCTA TTTCGAAAAC
CTCGGTTCGG ACAGGCTTCA GGTGGCCATT GATCTGGAGG CGGATCGCAT GATGAATCTG
AAGCTAAGCC CGGCGGACTT CCAGACGGAG AAAATGGTCG TGATGGAGGA GCGGCGGATG
AGGACCGAGG ACAATCCTCA GGCCTATCTC CTCGAACAGC TGGACGCGAC CGCCTACCAG
AACCAGCCCT ACCGCTGGCC GCCCGTCGGG TGGTTCGATG ACCTTGCCCG TCTTACGGTG
GAAGACGCCT CGGCCTTCTA CCGTGCGTTC TACAACCCCG CCAACGCCTT CATCGTGGTT
GTGGGGGATG CCACAATGGA AGACCTCCTT CCGCGCCTGG AGAAGGCTTT CGGCGTCATT
CCCGGGGGAG CCGTCCCGGA ACGGCTCCGC TTCGAGGATC CTCCTCAGGT TGGCATGCGG
CGGATCGAGG TGGAGCGGCC GGCGCAACTC GCCGCCGTGA TCATGGCCTA CCATGTGCCG
AACGTGCGGA GCCCGGATGC TTACGTATTG GAAGTCATTT CCTCGGTCCT GGCCTCCGCG
AAGAGTTCCA GGCTTTACGA ACGGCTGATC GCCGACGGGA GGCTTGCAGT GGAGGCTGAC
GCGGACTATT CTCCCCTGAG CTTCGATCCG GGGCTTTTCT ACATCTCGGC GACCGTTATG
CCGGGCAAGA CTGCCGGAGA TGTCGAGGAG GCGGTGACGG CTGAACTTGA ACGGCTCAAG
AACGAACCCG TGAGCGATGA GGAGCTGGAA AAGGCCAAGA ATCAGCTCGA GGCGATGTTC
GTCTTCCATC GGGACTCCCT GTTCTACCAG GGTATGATGC TCGCGCAATA CGAGATCGCC
GTCGGCTGGA AGGAAATCGC CCGATACGTG CCGTCCATCC GCAAGGTCAC CGCGGAGGAT
ATCCGGCGGG TGGCACGCCT CTATTTCACT CCCCGCAATC TGACCGTCGG CACGATAGTC
CCTGCCGCCG GCGAGGAGGG GGTGCCTCCG CCCGCAAGTT CACCCATCAT CGAAAAAACG
GTTCGCTTGA AAAACGAAGG TGCCGTCACG ACCGAAGCGC CGTGCCCGGG CGGTCCGACC
GGGAGCGCCG GTTCGGGGGA ACAGGAGGGC CGGAGACAAT GA
|
|---|
| Protein sequence | MISNSLKLLL TVLLATAIHH GAGAAPARGQ EGVSEALLSN GMRVILQENH RAPIVSFQVW
YRAGSRNEQW GKTGLAHLFE HLMFKGTQTV SGSEFSRRIQ ENGAEFNAFT SSDYAAYFEN
LGSDRLQVAI DLEADRMMNL KLSPADFQTE KMVVMEERRM RTEDNPQAYL LEQLDATAYQ
NQPYRWPPVG WFDDLARLTV EDASAFYRAF YNPANAFIVV VGDATMEDLL PRLEKAFGVI
PGGAVPERLR FEDPPQVGMR RIEVERPAQL AAVIMAYHVP NVRSPDAYVL EVISSVLASA
KSSRLYERLI ADGRLAVEAD ADYSPLSFDP GLFYISATVM PGKTAGDVEE AVTAELERLK
NEPVSDEELE KAKNQLEAMF VFHRDSLFYQ GMMLAQYEIA VGWKEIARYV PSIRKVTAED
IRRVARLYFT PRNLTVGTIV PAAGEEGVPP PASSPIIEKT VRLKNEGAVT TEAPCPGGPT
GSAGSGEQEG RRQ
|
|---|
| |