Gene Sfum_3175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3175 
Symbol 
ID4458481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3890357 
End bp3893089 
Gene Length2733 bp 
Protein Length910 aa 
Translation table11 
GC content60% 
IMG OID639703946 
ProductSecD/SecF family protein export membrane protein 
Protein accessionYP_847283 
Protein GI116750596 
COG category[R] General function prediction only 
COG ID[COG4258] Predicted exporter 
TIGRFAM ID[TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTTGC TGAGACGCTA CCTGCGGATA TGGATGAACT TCGTGCTGAA CTGGCCGCGC 
CTGGTGCTGG CCATCGCTTT CGCATCGGCC ATCGCGTCCG TCGGGCTGAC CGTAACGAAG
CTCGGCATGC TTACGGACCA ACTCGAGCTC ATCTCACCGG ATCATCCCTT GATCGCCTTG
AGCGACAGAC TCGACGCCTT CACTTCAGAC AGCAAGAGGC GGTTCACCGT TGCCGTCAAG
GCTTCGAACC CGCACCGGGC GGTCGCTTTT GCCAACGAGC TGTCCTCGAA AATCGCACAG
GATCCGGTCC ACTTTCAGAA CATGTTCTAT CGCGTGGACC CGGAGATGTT CAAGACGTGG
CAACTCTTAT ACCTGGACAG GCAGGAACTG GTCGACCTCA GGGACAAGAT CGTCGAGCAG
GAAAAGCTCG TCCGGGGGCT GGCTCAGGAG CCGGGGTTGT TGAGCCTGCT GCGGCTCATC
AACCAGGAGA TGGCCTCCCG GATGGTTGGC GAGCTGTTCA CGGGCTTTCT CGATGAAAAG
GCAACCGAAG ACAGCCGGCA GGAACCTTTC GACCTGAATT TTCTCATCAC GGTTCTGGAG
GGGATGTCGA GCTATCTGAA CGACTCTCCC TCTTACCAAT CGCCGTGGTC TTCCCTGTTC
AAGGATTCCT CGTGGGATCC CGACCTTGAG GGCTTCTTCT GGGAAGGCAG GAAGCAGTAC
CTCCTGGCCT TCGTCATACC CCATAAATCG GACGAGGGAT TTCTCCGAAC ACAGGGGGCC
CTGGACAAGC TTCGCGCTCT GCTCCTGGAG GTAAGGGCTT CCTATCCCGA CGTGCAGGCG
GGGGTGACTG GTCAGGAAGC ATTGATCAAC GACGAGATGA CCACTGTTTT GAGCGACATG
GAGGTTGCCA CGTGGCTCTC CATCGCCGGG GTGTTCGTTC TCCTGGTGGC CTTCCGGCGG
AGTGTCCGCC GCCCGCTGCT CCAGATCATC TCCCTCACCG TGGGACTCTG CTGGACGCTG
GGCTGGACGA CGCTGTTTGT CGGCCACCTC AACATCATCT CCATTGTCTT TGCCCCCTTG
CTGTGCGGGC TCGGGGTGGA TTCGGGCATC CACTGGTTCT CCCGGCTGGA AGAGGAGGAG
CATTGCGGCG ACTGCGACAT GAAGTCGGTC GTCAGGATCG TGAACGACCG CTCCGGCCCC
GGGATTCTTC TTGCCGGGCT CAGTACGACG CTGGCTTTCC TGCCGTTTGT GTTGACGGGT
TTCAGGGGGT TGATCGAGCT GGGGCTGGTG ACCGGGATGG GAATCCTGCT CAACCTGTTC
GCCGACTTCA GCGTACTGCC CGCTCTTGCC GTGCTGGCGG GAGGAAAACC GAAACAAAAA
TTGTCTCCGG AGGCAATACC GGGGGAAAAG GACCTGATTC GGCTCAGACC CGGCCACTCG
CGGCTGGTTC TGGCCGGGGC CGGAGTGCTG GCTCTTTTGT GCACGCTGAG CGGAAGCCAT
GTGTACTTCG ATCTCAACCC CTTGCGGCTC CAACCCGCGG AGGCCGAATC GGTCGTTTGG
GAAAAAGCGC TGATCGAGAA CTCGGAACGA TCGGCACTGT CCGCCAGTTC CTTTGCCGCC
TCGCCGGAGG AAGTGAGGAC GAAGTCCGCC GCGCTGAAAG CTCTGCCGTC CGTTTCAGAG
GTCGAGAGTA TCTTTTCGCT GCTCCCGGAG GACCAGGAGG AAAAGATTCC CCTGCTCCGT
TCCCTTGGTC CCAGGATTCC TGAAATACGC GCCGATGCAA TGGAGAGCCG GCCGCCGTCG
CCGGCGGAAT TCGTGGAAGT CCTGGAGCGG ATCCGGTTCA AGCTCCAGGA CGATCAGGCT
GAACGATGGG GGGCGGACAA GCCTCTCGTG GAGCAAATGA CCCGTGTGCG GGCGCTCACG
CAGGAGATCG TCGGCCTGCT CCGCGGATCG TCCCACGCAC CCGAAAGGCT CATGGAGTAC
CGCAAACGAT TCCTGGAAGA CATGATGAAC AAATGGGATT CCTTGAGAAA GGGGACCGAT
CCGTCACCCA TGGATGTGGA GAATCTGCCC GCTCTTTTGA GAGGCTGGTT CGTCCAGGAC
GGTATCTACC TGTTGCGCAT ATACCCCAAG GAGTCCGTCT GGGAAGCACA CGCGCTCACT
AAATTCGTGC GGGAGATTCA GAGCGTTGAC CCGGAAGTCG TCGGGGAACC CGTGTCCCTG
TTCGTTTTTG CCTCCGCGTA CAGGAATGCG TGCATCAAGG CTTCCATGTT CGCGCTGGTG
GGGATCTCCA TTCTGCTGGC ACTCACGTTC AGAAACCTGC GGCTGACCCT GCTGGCGCTC
GTCCCCCTGG GTCTTGGAAC ACTGTTGACC GTCGGAATCA TGGGCGTGGC CGACGTTCAG
TTCAATCTCG CGAACAGCGT GTTCATGCCG CTCGTGGTGG GGGCGGGCGT GGAATATGCC
GTCGTCATTC TGAGCCGCTG GAAGGAGGGA AGGATGCTGC CCGGACACCT TCCGTTCAGC
ACGGGGAAAG GGGTCATCCT GGCCGCCCTG ACGACGACGG TGGGCTTCGG CGCTCTCATG
ATCTCTCATC ACAGGGGTAT TTTCAGCCTG GGGTTCGTGG CCTGGGCCGG AAGCCTCTGC
GTCCTGGCGA GCGCCATACT CGTGCTGCCC GCCATTTTGA CGTCCCTGCA ACCTCAAAAG
GTCGAAGAGG AGGGGCAGGC CGTCGCGCGG TGA
 
Protein sequence
MDLLRRYLRI WMNFVLNWPR LVLAIAFASA IASVGLTVTK LGMLTDQLEL ISPDHPLIAL 
SDRLDAFTSD SKRRFTVAVK ASNPHRAVAF ANELSSKIAQ DPVHFQNMFY RVDPEMFKTW
QLLYLDRQEL VDLRDKIVEQ EKLVRGLAQE PGLLSLLRLI NQEMASRMVG ELFTGFLDEK
ATEDSRQEPF DLNFLITVLE GMSSYLNDSP SYQSPWSSLF KDSSWDPDLE GFFWEGRKQY
LLAFVIPHKS DEGFLRTQGA LDKLRALLLE VRASYPDVQA GVTGQEALIN DEMTTVLSDM
EVATWLSIAG VFVLLVAFRR SVRRPLLQII SLTVGLCWTL GWTTLFVGHL NIISIVFAPL
LCGLGVDSGI HWFSRLEEEE HCGDCDMKSV VRIVNDRSGP GILLAGLSTT LAFLPFVLTG
FRGLIELGLV TGMGILLNLF ADFSVLPALA VLAGGKPKQK LSPEAIPGEK DLIRLRPGHS
RLVLAGAGVL ALLCTLSGSH VYFDLNPLRL QPAEAESVVW EKALIENSER SALSASSFAA
SPEEVRTKSA ALKALPSVSE VESIFSLLPE DQEEKIPLLR SLGPRIPEIR ADAMESRPPS
PAEFVEVLER IRFKLQDDQA ERWGADKPLV EQMTRVRALT QEIVGLLRGS SHAPERLMEY
RKRFLEDMMN KWDSLRKGTD PSPMDVENLP ALLRGWFVQD GIYLLRIYPK ESVWEAHALT
KFVREIQSVD PEVVGEPVSL FVFASAYRNA CIKASMFALV GISILLALTF RNLRLTLLAL
VPLGLGTLLT VGIMGVADVQ FNLANSVFMP LVVGAGVEYA VVILSRWKEG RMLPGHLPFS
TGKGVILAAL TTTVGFGALM ISHHRGIFSL GFVAWAGSLC VLASAILVLP AILTSLQPQK
VEEEGQAVAR