Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_3175 |
Symbol | |
ID | 4458481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 3890357 |
End bp | 3893089 |
Gene Length | 2733 bp |
Protein Length | 910 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639703946 |
Product | SecD/SecF family protein export membrane protein |
Protein accession | YP_847283 |
Protein GI | 116750596 |
COG category | [R] General function prediction only |
COG ID | [COG4258] Predicted exporter |
TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTTGC TGAGACGCTA CCTGCGGATA TGGATGAACT TCGTGCTGAA CTGGCCGCGC CTGGTGCTGG CCATCGCTTT CGCATCGGCC ATCGCGTCCG TCGGGCTGAC CGTAACGAAG CTCGGCATGC TTACGGACCA ACTCGAGCTC ATCTCACCGG ATCATCCCTT GATCGCCTTG AGCGACAGAC TCGACGCCTT CACTTCAGAC AGCAAGAGGC GGTTCACCGT TGCCGTCAAG GCTTCGAACC CGCACCGGGC GGTCGCTTTT GCCAACGAGC TGTCCTCGAA AATCGCACAG GATCCGGTCC ACTTTCAGAA CATGTTCTAT CGCGTGGACC CGGAGATGTT CAAGACGTGG CAACTCTTAT ACCTGGACAG GCAGGAACTG GTCGACCTCA GGGACAAGAT CGTCGAGCAG GAAAAGCTCG TCCGGGGGCT GGCTCAGGAG CCGGGGTTGT TGAGCCTGCT GCGGCTCATC AACCAGGAGA TGGCCTCCCG GATGGTTGGC GAGCTGTTCA CGGGCTTTCT CGATGAAAAG GCAACCGAAG ACAGCCGGCA GGAACCTTTC GACCTGAATT TTCTCATCAC GGTTCTGGAG GGGATGTCGA GCTATCTGAA CGACTCTCCC TCTTACCAAT CGCCGTGGTC TTCCCTGTTC AAGGATTCCT CGTGGGATCC CGACCTTGAG GGCTTCTTCT GGGAAGGCAG GAAGCAGTAC CTCCTGGCCT TCGTCATACC CCATAAATCG GACGAGGGAT TTCTCCGAAC ACAGGGGGCC CTGGACAAGC TTCGCGCTCT GCTCCTGGAG GTAAGGGCTT CCTATCCCGA CGTGCAGGCG GGGGTGACTG GTCAGGAAGC ATTGATCAAC GACGAGATGA CCACTGTTTT GAGCGACATG GAGGTTGCCA CGTGGCTCTC CATCGCCGGG GTGTTCGTTC TCCTGGTGGC CTTCCGGCGG AGTGTCCGCC GCCCGCTGCT CCAGATCATC TCCCTCACCG TGGGACTCTG CTGGACGCTG GGCTGGACGA CGCTGTTTGT CGGCCACCTC AACATCATCT CCATTGTCTT TGCCCCCTTG CTGTGCGGGC TCGGGGTGGA TTCGGGCATC CACTGGTTCT CCCGGCTGGA AGAGGAGGAG CATTGCGGCG ACTGCGACAT GAAGTCGGTC GTCAGGATCG TGAACGACCG CTCCGGCCCC GGGATTCTTC TTGCCGGGCT CAGTACGACG CTGGCTTTCC TGCCGTTTGT GTTGACGGGT TTCAGGGGGT TGATCGAGCT GGGGCTGGTG ACCGGGATGG GAATCCTGCT CAACCTGTTC GCCGACTTCA GCGTACTGCC CGCTCTTGCC GTGCTGGCGG GAGGAAAACC GAAACAAAAA TTGTCTCCGG AGGCAATACC GGGGGAAAAG GACCTGATTC GGCTCAGACC CGGCCACTCG CGGCTGGTTC TGGCCGGGGC CGGAGTGCTG GCTCTTTTGT GCACGCTGAG CGGAAGCCAT GTGTACTTCG ATCTCAACCC CTTGCGGCTC CAACCCGCGG AGGCCGAATC GGTCGTTTGG GAAAAAGCGC TGATCGAGAA CTCGGAACGA TCGGCACTGT CCGCCAGTTC CTTTGCCGCC TCGCCGGAGG AAGTGAGGAC GAAGTCCGCC GCGCTGAAAG CTCTGCCGTC CGTTTCAGAG GTCGAGAGTA TCTTTTCGCT GCTCCCGGAG GACCAGGAGG AAAAGATTCC CCTGCTCCGT TCCCTTGGTC CCAGGATTCC TGAAATACGC GCCGATGCAA TGGAGAGCCG GCCGCCGTCG CCGGCGGAAT TCGTGGAAGT CCTGGAGCGG ATCCGGTTCA AGCTCCAGGA CGATCAGGCT GAACGATGGG GGGCGGACAA GCCTCTCGTG GAGCAAATGA CCCGTGTGCG GGCGCTCACG CAGGAGATCG TCGGCCTGCT CCGCGGATCG TCCCACGCAC CCGAAAGGCT CATGGAGTAC CGCAAACGAT TCCTGGAAGA CATGATGAAC AAATGGGATT CCTTGAGAAA GGGGACCGAT CCGTCACCCA TGGATGTGGA GAATCTGCCC GCTCTTTTGA GAGGCTGGTT CGTCCAGGAC GGTATCTACC TGTTGCGCAT ATACCCCAAG GAGTCCGTCT GGGAAGCACA CGCGCTCACT AAATTCGTGC GGGAGATTCA GAGCGTTGAC CCGGAAGTCG TCGGGGAACC CGTGTCCCTG TTCGTTTTTG CCTCCGCGTA CAGGAATGCG TGCATCAAGG CTTCCATGTT CGCGCTGGTG GGGATCTCCA TTCTGCTGGC ACTCACGTTC AGAAACCTGC GGCTGACCCT GCTGGCGCTC GTCCCCCTGG GTCTTGGAAC ACTGTTGACC GTCGGAATCA TGGGCGTGGC CGACGTTCAG TTCAATCTCG CGAACAGCGT GTTCATGCCG CTCGTGGTGG GGGCGGGCGT GGAATATGCC GTCGTCATTC TGAGCCGCTG GAAGGAGGGA AGGATGCTGC CCGGACACCT TCCGTTCAGC ACGGGGAAAG GGGTCATCCT GGCCGCCCTG ACGACGACGG TGGGCTTCGG CGCTCTCATG ATCTCTCATC ACAGGGGTAT TTTCAGCCTG GGGTTCGTGG CCTGGGCCGG AAGCCTCTGC GTCCTGGCGA GCGCCATACT CGTGCTGCCC GCCATTTTGA CGTCCCTGCA ACCTCAAAAG GTCGAAGAGG AGGGGCAGGC CGTCGCGCGG TGA
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Protein sequence | MDLLRRYLRI WMNFVLNWPR LVLAIAFASA IASVGLTVTK LGMLTDQLEL ISPDHPLIAL SDRLDAFTSD SKRRFTVAVK ASNPHRAVAF ANELSSKIAQ DPVHFQNMFY RVDPEMFKTW QLLYLDRQEL VDLRDKIVEQ EKLVRGLAQE PGLLSLLRLI NQEMASRMVG ELFTGFLDEK ATEDSRQEPF DLNFLITVLE GMSSYLNDSP SYQSPWSSLF KDSSWDPDLE GFFWEGRKQY LLAFVIPHKS DEGFLRTQGA LDKLRALLLE VRASYPDVQA GVTGQEALIN DEMTTVLSDM EVATWLSIAG VFVLLVAFRR SVRRPLLQII SLTVGLCWTL GWTTLFVGHL NIISIVFAPL LCGLGVDSGI HWFSRLEEEE HCGDCDMKSV VRIVNDRSGP GILLAGLSTT LAFLPFVLTG FRGLIELGLV TGMGILLNLF ADFSVLPALA VLAGGKPKQK LSPEAIPGEK DLIRLRPGHS RLVLAGAGVL ALLCTLSGSH VYFDLNPLRL QPAEAESVVW EKALIENSER SALSASSFAA SPEEVRTKSA ALKALPSVSE VESIFSLLPE DQEEKIPLLR SLGPRIPEIR ADAMESRPPS PAEFVEVLER IRFKLQDDQA ERWGADKPLV EQMTRVRALT QEIVGLLRGS SHAPERLMEY RKRFLEDMMN KWDSLRKGTD PSPMDVENLP ALLRGWFVQD GIYLLRIYPK ESVWEAHALT KFVREIQSVD PEVVGEPVSL FVFASAYRNA CIKASMFALV GISILLALTF RNLRLTLLAL VPLGLGTLLT VGIMGVADVQ FNLANSVFMP LVVGAGVEYA VVILSRWKEG RMLPGHLPFS TGKGVILAAL TTTVGFGALM ISHHRGIFSL GFVAWAGSLC VLASAILVLP AILTSLQPQK VEEEGQAVAR
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