| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3173 |
|---|
| Symbol | |
|---|
| ID | 4458513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 3888273 |
|---|
| End bp | 3889010 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639703944 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_847281 |
|---|
| Protein GI | 116750594 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACGA ATGTTCCAAA CTATTGTTCC AAACCGGCGC TCAAAACTAA CGTTTGTACA
GCGGATAAAG AGATTTCCAT GCAGGATGGC CCGAAGAAAA GCGACGATAC GAAGGCGAGG
CTGATCGAGG CGGCTGGAGC GGTGTTTGCG CGGCAGGGAT TCCGATGGGC GACCGTCAGG
GAAATTTGCA GCCGTGCCGG CGCTCATGTG GGTTCCGTGA ACTACCACTT CCGGGACAAG
GAAGGACTCT ACGCGGCGGT CCTCGAGCAC ACGCAGCGAT CCGCCGTGGA AAAATACCCG
CCCGACTTGG GCCTCCGGGA GGGAGCCACA CCGCAGGAGA GACTCCGGGC ATTCGTTCAC
TCACTGCTGT CGCGCATCCT GGCCGAAGGG GTTCCGGCCT GGCACGGGAA GCTCCTTGCC
CGCGAAATCG CGGAACCGAC CGAAGCTCTG GACCGATTGC TGCAGAATTC GGTACGGCCC
CTTTTTTCGT ATCTGGCCGG CATAGTACGC GAGCTGCTCG AAGAAGCCGA CCCGCCGGAG
GGTGAGGAGA GCGATGTCGT TTTCCTGTGC CTGATGAGCA TCGTCGGACA GTGCCTGCAG
CATTACACGG CAAGACGGGC CATTGCCGTG CTTCGACCGA AGAGCTTCGA TCCGTCCGAC
ATCGAGCGTA TTGCGGATCA TATTTCGCGG TTCTCCATTG GAGGCATTCG AGAGCTCAGA
GCGGGGAAAT CACCCTGA
|
|---|
| Protein sequence | MRTNVPNYCS KPALKTNVCT ADKEISMQDG PKKSDDTKAR LIEAAGAVFA RQGFRWATVR
EICSRAGAHV GSVNYHFRDK EGLYAAVLEH TQRSAVEKYP PDLGLREGAT PQERLRAFVH
SLLSRILAEG VPAWHGKLLA REIAEPTEAL DRLLQNSVRP LFSYLAGIVR ELLEEADPPE
GEESDVVFLC LMSIVGQCLQ HYTARRAIAV LRPKSFDPSD IERIADHISR FSIGGIRELR
AGKSP
|
|---|
| |