Gene Sfum_3139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3139 
Symbol 
ID4458549 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3854403 
End bp3855236 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content61% 
IMG OID639703910 
Productthiamine pyrophosphate binding domain-containing protein 
Protein accessionYP_847247 
Protein GI116750560 
COG category[C] Energy production and conversion 
COG ID[COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCTG TTGTACACCC GTTGCGAAAA TACATGAGGC CGCACGTGAC CAGGACGACG 
AACTGCCCGG GGTGCGGGAA TGGGATTATC ATTCAATCGA TCCTCAGGGC CATCGATGAG
CTCGGCCTGA GCATGGACGA CTTTGTTTTC GTGTCCGGCA TCGGCTGCTC GGCATGGATT
CCGAGCCCGC TGTTCGAAGT CGACACGCTC CACACGACCC ACGGGCGTCC CATCGCCTTT
GCCACCGGCG TGAAGCTCGG CCTGCCCGGC AAGCACGTGA TGGTGACGAG CGGGGACGGC
GACCTGGCGG CCATCGGCGG GAACCACCTG ATCCACGCGG CGCGCCGGAA CATCGACCTG
ACCGTCGTAC TCGTGAACAA CGGCATCTAT GCCATGACCG GCGGACAGAC CGCGCCCACC
ACGCCTCGGG GCCTGATGAC GGTCACCAAC CCGTATGGGA CACTCGAACC GACGTTCGAC
ATTTCCGCCC TGGTGGCCGC CGCGGGAGCG TCCTTCGTGG CGCGCTGGAC CACCTGGCAC
CCGAGGCAGA TGACCAGGTC CATCAAAAAG GCCATCCAGA AGAAGGGATT TGCCCTGGTC
GAAGCGGTGA GCCAGTGCCC GGTCCAGTTC GGCAAGGTGA CGAAGATGGG CAAGGCGCTC
GATATCCTGA GGCATTACAA GGAGAACAGC GTCAAGTTCG AAAAAGCGAA GAACATGGAC
CCGGAGGCAC TCAAGGACAA AATCCTCGTG GGTGAACTGG TCGATGTGGA AAAGCCCGAG
CTCTCCACCC AATGGGAACT CTTGAAACGC CGAGTGATGG AGGAAATGAA ATGA
 
Protein sequence
MSAVVHPLRK YMRPHVTRTT NCPGCGNGII IQSILRAIDE LGLSMDDFVF VSGIGCSAWI 
PSPLFEVDTL HTTHGRPIAF ATGVKLGLPG KHVMVTSGDG DLAAIGGNHL IHAARRNIDL
TVVLVNNGIY AMTGGQTAPT TPRGLMTVTN PYGTLEPTFD ISALVAAAGA SFVARWTTWH
PRQMTRSIKK AIQKKGFALV EAVSQCPVQF GKVTKMGKAL DILRHYKENS VKFEKAKNMD
PEALKDKILV GELVDVEKPE LSTQWELLKR RVMEEMK