| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3126 |
|---|
| Symbol | |
|---|
| ID | 4458536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 3838972 |
|---|
| End bp | 3839841 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639703897 |
|---|
| Product | YdjC family protein |
|---|
| Protein accession | YP_847234 |
|---|
| Protein GI | 116750547 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3394] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03473] hopanoid biosynthesis associated protein HpnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.246064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATGAACC GAGCTCGAGT GATTCTCAAC GGCGATGATT TCGGGGCCTC CGAAGAAGTC
AACCACGCCA TTGTCGCGGC ATTCCGACGG GGCGTCCTGT CGAGTTGCAG CCTCATCGTC
ACCGGCGATG CCGCCCCTCA CGCAGTCAAG CTGGCCAGGG AAAATCCCGG TTTGGCCGTC
GGTCTCCATC TCGTCACCGT TCTCGGCAAG TCCGTGCTGC CCCCCAAGGA AATACCGGCG
TTGGTGGACC GGAACGGATG TTTTCCTTCC GATCCGGCCA TCGCCGGATT GCGGTATTTT
TTTTGCCCGG CGGCCAGGAA GCAGTTGAAA CGCGAGCTCT CGGCCCAGTT CGAGCAGTTC
AGGGCCACCG GTCTGAGGGC ATCTCACGTG GACAGCCACC TGCACATGCA CGTGCATCCG
GTGGTGTTCG ACGCGGCCGT GGAACTCGCC GGGAAGCACG GCATCCGGGG AATGCGGTTG
CCGGAAGACG ATCTGTGGAC TGCCGTACGC TTCGACGGCG GCCTGTCCGC TGCAAGAATG
CTCACCACCC TCGTTTTTCG CCTGTTGTGC CGGCGCATGA AGCGGGTCCT GAGAAGGGAG
GGCTTCGCAT TTGCTCCGAG GGTCTTCGGC CACCTGATGA GCGGCGGAAT GACCGAGGAA
TATGTCCTCC ACGTGTTGAG ACATCTCCCG GTCGCAACGA ACGAAATTTA CTTCCATCCG
GCCCTGTGTC ATAGTGTGGA ACGTGGTGAC GCCACGGCGG CCCAGCTTGC GAAGGAATTC
GAAATCCTGA TCAGCCCCCG AGTGAAGGAG GCCATCCGGA CAGGCGGTAT CGATGTGATC
AATTACAGCA ACTTGAAGGC ATGCTTATGA
|
|---|
| Protein sequence | MMNRARVILN GDDFGASEEV NHAIVAAFRR GVLSSCSLIV TGDAAPHAVK LARENPGLAV
GLHLVTVLGK SVLPPKEIPA LVDRNGCFPS DPAIAGLRYF FCPAARKQLK RELSAQFEQF
RATGLRASHV DSHLHMHVHP VVFDAAVELA GKHGIRGMRL PEDDLWTAVR FDGGLSAARM
LTTLVFRLLC RRMKRVLRRE GFAFAPRVFG HLMSGGMTEE YVLHVLRHLP VATNEIYFHP
ALCHSVERGD ATAAQLAKEF EILISPRVKE AIRTGGIDVI NYSNLKACL
|
|---|
| |