| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3024 |
|---|
| Symbol | |
|---|
| ID | 4458644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 3728885 |
|---|
| End bp | 3730603 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639703796 |
|---|
| Product | acetolactate synthase, large subunit, biosynthetic type |
|---|
| Protein accession | YP_847133 |
|---|
| Protein GI | 116750446 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000501065 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.146294 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGC GGGGAGCTCA GATATTTTTC GAGTGCTTGA AGAAGGAAGG GGTCGAGGTC
ATCTTCGGTT TCCCCGGCGG GGCAGTGCTC GACATATACC ACGAGATGCC AAAGCACAAT
ATTCGGCACA TCCTGGTGCG CCACGAACAG GGTGCCGCTC ACATGGCCGA CGGTTACGCC
AGGGCGAGCG GACGCGTCGG TGTGTGCCTG GTTACCTCCG GCCCGGGCGC CACCAACACG
GTCACCGGCG TCGCCACCGC GTACATGGAT TCCGTCCCCA TGGTGGTCTT TACCGGGCAG
GTGCCGACGC CGCTTATCGG CGACGATGCC TTCCAGGAAG TGGACATCAT CGGCATTACA
CGTCCGTGCA CGAAGCACAG CTACCTCGTG CGCAACGTCA ACGACATGTC CCGGGTGATT
CGCGAGGCGT TTTACCTGGC GCGCACGGGG CGGCCCGGTC CGGTTGTGGT CGACCTGCCC
AAGGACGTGA TCCAGGCCTC CACCGACTTC AAGTATCCCA AGAAGGTGGA CCTTCCCGGC
TACCGTCCCA CGGTCGAAGC CCATTCCGGG CAGGTAAAGC GGGCGTACGA GGTTTTGAGG
AAGGCCAAAT CGCCGCTCAT CTTCGCGGGA GGCGGTATCA TCATTTCGGA TTCATCGCAG
GAGTTGATCA GGATAGCCGA CCTGATCCAG GCCCCGGTGA CCTGCTCGCT CATGGGCCTT
GGCTGTTTTC CGGCCGGGAT TGCCGACGCC AAAGGCCGGC GGCGGCCCAA TCCGCTCTGG
CTGGGTATGG TGGGGATGCA CGGCACCTAC CAGGCGAACA TGGCGATATC CCAGGCCGAT
GTGATCTTCG GCGTCGGCGT GCGCTTCGAC GACCGTGTCA CCGGCAAGAT CAGCGAGTTT
GCGCCGAAGG CCAAAATCAT ACACATTGAC GTCGACCCGT CGAGCATCAG CAAGAACGTG
GTGGTTGACG TTCCCATTGT GGGCGACTGC AAGAATGCGC TCCAGCAGTT GATCCGGTTG
TTCGAAGGCG AACCCCTGGA AGGTGTTTCC GACGTGCGAC GCCCTTGGTT CGATCAGATC
AACGCATGGA AAAAAGGACA TCCGCTCACT TATGTTCAGG GAAACGAGCT CATAAAGCCC
CAATACGTCA TTGAAAAAAT CTGGGAGCTC ACCGGCGGCG ATGCCATCAT CACGACGGAA
GTGGGCCAGC ACCAGATGTG GACCGCCCAG TTCTTCGAAT TCGACCGCCC GCGCTCCCTG
CTGACCTCCG GAGGCCTGGG AACGATGGGC TACGGGTTTC CGGCCGCCAT CGGCGCGCAG
ATGGCCTTCC CCGACAGGCT CGTCATCGAC ATTGCGGGAG ACGGGAGCAT CCAGATGAAC
ATCCAGGAGC TTTGTACGGC CGTCTGCAAT GACATCCCGG TGAAAGTGGC GATCCTCAAC
AATCTCTACC TGGGATTGCC CCGCCAATGG CAGGAGCTTT TCTACGAGAA GAACTACACG
GGGTCCTGCA TGGAAGGCTC TCCGGATTTC GTGAAGCTCG CCGAGGCCTA CGGAGCGATT
GGGCTGAGGG CCAATAAGCC CGAAGAAGTC GAGCCGGTTC TGCGGGAAGC TTTCAAGATC
AGAAAGCCTG TACTGATGGA CTTCCTCGTG TCGCGGGAAG AAGGCGTTTA CCCCATAGTC
CCGCCCGGAA AGAGCATAAC CGAGATGCTT CTGGCGTAG
|
|---|
| Protein sequence | MKMRGAQIFF ECLKKEGVEV IFGFPGGAVL DIYHEMPKHN IRHILVRHEQ GAAHMADGYA
RASGRVGVCL VTSGPGATNT VTGVATAYMD SVPMVVFTGQ VPTPLIGDDA FQEVDIIGIT
RPCTKHSYLV RNVNDMSRVI REAFYLARTG RPGPVVVDLP KDVIQASTDF KYPKKVDLPG
YRPTVEAHSG QVKRAYEVLR KAKSPLIFAG GGIIISDSSQ ELIRIADLIQ APVTCSLMGL
GCFPAGIADA KGRRRPNPLW LGMVGMHGTY QANMAISQAD VIFGVGVRFD DRVTGKISEF
APKAKIIHID VDPSSISKNV VVDVPIVGDC KNALQQLIRL FEGEPLEGVS DVRRPWFDQI
NAWKKGHPLT YVQGNELIKP QYVIEKIWEL TGGDAIITTE VGQHQMWTAQ FFEFDRPRSL
LTSGGLGTMG YGFPAAIGAQ MAFPDRLVID IAGDGSIQMN IQELCTAVCN DIPVKVAILN
NLYLGLPRQW QELFYEKNYT GSCMEGSPDF VKLAEAYGAI GLRANKPEEV EPVLREAFKI
RKPVLMDFLV SREEGVYPIV PPGKSITEML LA
|
|---|
| |