Gene Sfum_2960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2960 
Symbol 
ID4458720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3657438 
End bp3658814 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content64% 
IMG OID639703732 
Productamidohydrolase 
Protein accessionYP_847069 
Protein GI116750382 
COG category[F] Nucleotide transport and metabolism
[R] General function prediction only 
COG ID[COG0402] Cytosine deaminase and related metal-dependent hydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCGATA TATCGCCCGC ACGATCAAAC CCTGAACCCG GCGGGACCCC ACCTCGCGAG 
GTCGATTGGC TGCTTGCGGA TGCGGACTGG GTTCTGACCT GCGATGCAGC CATGAGCGCG
ATCCCTTCGG GCGCGGTCGC CATCGAGGGC GACACCCTTG TCGGGGTCGG GTCATCGCGG
GACATCCGGT CACGGTTCAG AGGCCGCAAC GAAATGTGTC TCAAGGGCTG CCTCGTCGCC
CCCGGTCTCA TCAACACCCA CGGGCACGCG GCCATGAGCT GCTTCCGGGG GCTCGGCAGC
GATCTTCCCC TGGAACGCTG GCTCACCGAG GTCATTTTCC CGGCGGAGGC TTCTCATGTG
ACGCCGGAAT TTGTCCATTA CGGGACGCTG CTGTCGTGCA TCGAGATGCT CAAAGGCGGA
ACAACGACAT TTTGCGACGG GTATTTCTTC GAGGAAGAAG CCGCGCGGGC GGCACAGGAA
TCGGGTATCC GCGCCGTTCT CGGCCAGGGC ATACTGGACT TTCCCACTCC CGACCAGCCC
GATCCGTCGC GGTTCGCGGA ACGCGCCGAA GCTTTTCTGC GCTCCTTCCC CCCGGGGGAG
AGCCGCCTGC AACCGTCATT GTTCTGCCAT TCGATATCCG CCTGCGGGCC GGAAACCCTG
CGGCGGGTCA AATCCATCTG CCGGGAAAGC GGCATCCTGT TCCAGATTCA CCTCTCCGAA
ACGGCATCGG AGGTGGAGCA GGTGATCGGC AGGTACGGAA CCAGGCCCGT CCATCACCTG
GACCGCCTCG GCATCCTGGA TGACCGAACC CTTTGCGCCC ATGCCGTCTG GCTCGACCGG
GAGGAAATCG ATATCCTGGC TGCGCGGGGC GCGGGCCTCT CCCACAACGA GGAAAGCAAC
ATGAAGCTCG CTTCGGGAAT CGCTCCGGTT CCGGAGCTGA TCGGCGCGGG CGTCCGAATC
GGCCTGGGCA CCGATGGCTG TGCCAGCAAC AATGACCTGG ATCTCTTTTC CGAAATGGAC
ATGGTTGCAA AGAGCCACAA GGCGTTTCGA AAGGACCCGA TGGCCTGTTC GGCCGCGGCC
GTTCTCCGAA TGGCCACCCG AGGGGGCAGC GCCGTTCTGT CGCACCAGGG GATGACCGGC
GGTATCGAGG AGGGCTGGAA AGCGGACCTG ATCGTCATCG ACCTCGATCA ACCCCACCTT
ACGCCTCTCT ATGACCCCAT CTCCCACCTG GTCTATGCGG CCGGCGCGGG GGACGTCCGC
CATGTTTGGG TCGACGGCCG CCTGGTGGTC TCGAACGGGA CAATCCTGAC CCTGGACGAG
TCTCGGATCA TGAAAGAAGT GCTGAGAATC GCCGGGAAGA TCGCCGGGGC GTCCTGA
 
Protein sequence
MSDISPARSN PEPGGTPPRE VDWLLADADW VLTCDAAMSA IPSGAVAIEG DTLVGVGSSR 
DIRSRFRGRN EMCLKGCLVA PGLINTHGHA AMSCFRGLGS DLPLERWLTE VIFPAEASHV
TPEFVHYGTL LSCIEMLKGG TTTFCDGYFF EEEAARAAQE SGIRAVLGQG ILDFPTPDQP
DPSRFAERAE AFLRSFPPGE SRLQPSLFCH SISACGPETL RRVKSICRES GILFQIHLSE
TASEVEQVIG RYGTRPVHHL DRLGILDDRT LCAHAVWLDR EEIDILAARG AGLSHNEESN
MKLASGIAPV PELIGAGVRI GLGTDGCASN NDLDLFSEMD MVAKSHKAFR KDPMACSAAA
VLRMATRGGS AVLSHQGMTG GIEEGWKADL IVIDLDQPHL TPLYDPISHL VYAAGAGDVR
HVWVDGRLVV SNGTILTLDE SRIMKEVLRI AGKIAGAS