| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2956 |
|---|
| Symbol | |
|---|
| ID | 4458716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 3649263 |
|---|
| End bp | 3651356 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639703728 |
|---|
| Product | glycogen debranching enzyme GlgX |
|---|
| Protein accession | YP_847065 |
|---|
| Protein GI | 116750378 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.490165 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCAA TACAATACGC GACCAGGCCG GGATCGAGGT ATCCCGGTGG AGCCACGGTC
GATTCGGGAG GGGTCAATTT CGCGGTCTTC AGTCGGAACG CGACCGCGAT GGAACTGCTG
CTTTACGAAT CCGCGGACTG CCCGGAGCCT TTCCAGGTGA TTCGGCTCGA CCCCGAAACC
AACAGGACCT TTTTTTCCTG GCACGTCTAT GTGGAAGGAC TGACCGCCGG CGCGCACTAC
ACCTGGCGAG TGGACGGTCC CGACGATACG AAACGATCCG GAAGACGCTT CGACCGGACC
CGGGAACTGC TGGACCCATG GGCGGCGGCG GTCACGGATC GGCTCTGGAA CCGCAACCGG
GCCTGTCTTA ACGGCGGCGG CGCTCCATCC ATGCGCGCTG CGGTCGTGTC CGGCGGCTAC
GACTGGGAAG GAGACCGACC GCTGGAGTCC CCATCCGAGT CCACCATCAT CTATGAATTG
CACGTCGGGG GCTTCACGCG GCATCCATCA TCCAAAGTCG CCCATCCCGG CACCTTTCGG
GGCCTGATCG AAAAAATCCC CTATTTGAAG GATCTGGGCA TCACTCACGT GGAATTGATG
CCGGTCATGG CCTTTGACGA ACAGGATCTT CCCGAGTCGG TCGCCGCCCT GGGACTGAAA
AACTTCTGGG GCTACAGCAC GCACAGCTTT TACGGCCCCC ACCCGGGGTA CTGCGTCACC
CCCGAGGCGG GGACTCACGC TCATGAATTC CGCGACATGG TCAAGGCGCT TCACCGCGCG
GGCATCGGTG TGATCCTCGA CGTGGTGTTC AATCACACCG CCGAAGGCGG GGCCCGCGGG
CCCGTCATCA ATTTCAAGGG CTTCGTCAAC GAGCTGTTCT ATCACCTCGA ACCCAACGAC
CGGAGCGTCT ACCGCGACTA TACGGGCTGC GGCAACACTG TCAACTGCAA CCACCCCCTG
CCGGCAAGAT TCATCATTCG CTGTCTTGAG GGCTGGGTCC GGGAAATGCA CGTGGACGGC
TTCCGGTTCG ACCTCGCCAG CGTCATGGCC CGCGGTGAAG ACGGCAACCC GATGCGGCAC
CCGCCGGTGC TTTGGAATAT CGAATTCTCG GACGTTCTCC TGAACACCCG AATCATTGCC
GAAGCGTGGG ACGCCGCCGG CCTCTACCAG GTGGGAACAT TTCCCGGCCT GCGCTGGGCG
GAATGGAACG GAAGATACCG GGACGTCATG CGCCGTTTCG TCCGCGGCGA ACCCGGGCTT
GCGGGACAGG CGGCAACCAA TCTGAGCGGC AGCAGCGATC TCTACCAGCC GCTGGACCGT
CTTCCGACGA ACAGCATCAA TTTCATCACG TGCCACGACG GCTTCACATT GAACGACCTT
GTCAGTTTCA ACGACAAACA CAATGACGCC AACGGCGAAA ACAACCGGGA CGGGAGCAAC
GACAACCTGA GCTGGAACTG CGGGGTGGAG GGAGACACCG ACGACCCGCA AGTCCTGGCG
CTGCGGCGCC GGCAGGTGAA GAATTACATG GCGATCCTGC TGCTGAGCCA GGGAGTTCCC
ATGATCCTGG CGGGCGATGA GGTGCTGAGG ACCCAGCGCG GGAACAACAA CTGCTACTGC
CAGGACAACG AGTTGGGTTG GCTCGATTGG ACTCTCATGG AGAAAAACCG GGACGTGCTC
CGGTTTGTCC GGGAAATGAT CGCATTCCGA AAGCGTCATC CATGCCTCAT GCGAACCCGC
TTCCTGACGG GCCGAAAGCA GCCGGGAAGG TCCCTCCCCG ACGTGAGCTG GCACGGCATC
AGGCTCAACG AGCCGCCATG GAGCGATCCG GATGCCCGAA CGCTTGCCTG CACCCTGTCC
GCCACGGAAG ATCATGAAGA AGACTTGCAC GTGATCCTCA ATATGGCTTC GGACCCCGTT
TCGCTTGACC TGCCGGAGAT CGCGGGTCTG AGCTGGCACC GTGCGGTGGA TACGTGGCTG
CCAAGCCCGG AAGATATTCT CAGGGTGCCC GATCAACTGC CTGTCCGGGA CCATCGCATT
CTGGCCCACG CACGCTGCGT GATGGTATTC GAAGGAAGAC CGGGGAGAAG TTGA
|
|---|
| Protein sequence | MMPIQYATRP GSRYPGGATV DSGGVNFAVF SRNATAMELL LYESADCPEP FQVIRLDPET
NRTFFSWHVY VEGLTAGAHY TWRVDGPDDT KRSGRRFDRT RELLDPWAAA VTDRLWNRNR
ACLNGGGAPS MRAAVVSGGY DWEGDRPLES PSESTIIYEL HVGGFTRHPS SKVAHPGTFR
GLIEKIPYLK DLGITHVELM PVMAFDEQDL PESVAALGLK NFWGYSTHSF YGPHPGYCVT
PEAGTHAHEF RDMVKALHRA GIGVILDVVF NHTAEGGARG PVINFKGFVN ELFYHLEPND
RSVYRDYTGC GNTVNCNHPL PARFIIRCLE GWVREMHVDG FRFDLASVMA RGEDGNPMRH
PPVLWNIEFS DVLLNTRIIA EAWDAAGLYQ VGTFPGLRWA EWNGRYRDVM RRFVRGEPGL
AGQAATNLSG SSDLYQPLDR LPTNSINFIT CHDGFTLNDL VSFNDKHNDA NGENNRDGSN
DNLSWNCGVE GDTDDPQVLA LRRRQVKNYM AILLLSQGVP MILAGDEVLR TQRGNNNCYC
QDNELGWLDW TLMEKNRDVL RFVREMIAFR KRHPCLMRTR FLTGRKQPGR SLPDVSWHGI
RLNEPPWSDP DARTLACTLS ATEDHEEDLH VILNMASDPV SLDLPEIAGL SWHRAVDTWL
PSPEDILRVP DQLPVRDHRI LAHARCVMVF EGRPGRS
|
|---|
| |