Gene Sfum_2943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2943 
Symbol 
ID4458736 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3631368 
End bp3634313 
Gene Length2946 bp 
Protein Length981 aa 
Translation table11 
GC content59% 
IMG OID639703714 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_847052 
Protein GI116750365 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.677183 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGGT CTCGCAGCCT GCTGAGGATA TTTTTGTGGA ACGCCGTCAT TGCCGTTCTG 
GTTGCCCTCG TTGCCGCCGG GATGTTGACC AACCTCACCC TGCGCTCGGT GGAGAAAAAC
CTGCCGAATA CACTGCTCGA ACAGCTGCAC GACGTGGCAC GCATCATCGA GGATCTTGCG
GATGTCGTGT CCGCGGCTGA ATTGACCAGG GCCGTCCCGA GCTCAGAGAA TCTCAAGCGG
CTCCGCGGGG AAGTCGACGC CGCAAACAAC GCCGTCGTAA GGCTCCGCAA CACATATGTT
TTTGACAATC TCATTCAGGC ATCCGCCATT CACGCAGTCG TTGCCCCGGC GCTCGCCGAT
GCCCGGGTCT GGCTTTCTGA AGGTGTCTCG GGATACGGCC CTGAATCGGA GACCACGATC
GGCGTCGTCC TGCTGAGAAT CTCCAAGGCG TTTCATAAAG CCAGGGCTCT GAACCACGCT
TCCGAAGAGA AAGCTCAAGC GATTCTGAAC GAGCAGCGCA CCCGGCTCGA CCGATTCCTC
TTCAGTGTCA ACCTGCTCTT TTCCCTGGCC GTGGTGATCA CCTTCGCCAT GGTTTTCCTT
CTCGTTTTTC AGCACATCCT TCAACGCCGG GAGAATGAAG CCCGGGCTGA ACGCAGGCGA
GCCGAACAGT CTCTGCGGGA GAGCGAGCAC AAGTTCAAGA CGCTGTTCAA CAATGCCGGC
GACGGAATCG CCATTCACGA TCTGGAGGGT CGCTTCCTGG AAGTCAACCA GGTTCTGTGC
GACCGGCTCG GTTACAGCAA AGAGGAGTTG TTGAGGCTTG GTCTCATGGG TATCGACGCT
TCCGAAGGCT CGGTTCTCCT GCCCGAGTGG GTCGATGAGT TGACGCACAA GGGCAGCGCC
TTCGTTGAGA CGATTCACGC GGTTCGCGAC GGAAGCCGTA TTCCCGTGGA AGTGAACAGC
CGAATGGTCG ATTTCGGCGG CGAACGCGCC ATACTCAGCA TGGTCCGCGA CATCACCGAA
CGAAAGCATG CCGAAGGGGC ACTCCGGGAG AGCGAAGCCA CCCTCAAGAG CATTTTCCGT
GTTGCGCCCA TCGGCATCGG ACTGCTGACC GACGGGATTC TCAAACAGGT GAACGACCGT
CTTTGCCGCA TGGTCTGTTA TTCGAGGCAG GAACTTGTGG GCGGCAGCGC ACGAATGCTC
TATTTGGACC AGGAGGAATT CGAACGGGCG GGCAAAGAAG AACACGCCCA GATCAGGCAC
TGGGGAACGG GAACCGTGGA GACGCTCTGG AAGAGGGGGG ACGGCGCGGT GATCGATGTC
CTCTTGAGCT CCACCCCCAT CGATCCGACG GATCTGGCCG CCGGGGTCAC CTTTACCGCC
CTGGATATTT CGGAACGCAA GCGGGCGGAG GCGGCATTGA GCGAGAGCCA GGCACGGTTC
AGGGAACTGG CGGAGCTGCT GCCAGAAACG ATTTTTGAAA TGGACGCCGA CGGACGTCTC
ACCTTCGTCA ACCGGAACGC CTACGACCAC TTCGGCTATT CAAAGGAGGA AATCGAGCGC
GGCGTGAACG GTTACATGAT GATCTCGCCC GAGGACCGCC CGAAAGCCGC CGAGAATGCA
AGAAGAGTCA TGGCCGGAGA GAGGATCGGG CTCAATGAGT ACAAGGCGCT CAGAAAAGAC
GGGTGCACCT TTCCCGTCAT CATACACTCG TCGGCAAAGC TGGATGACGG AAAACCGTCG
GGTATCCGGG GCATCATCAT CGATATCACC GAAACCAAGA AGCTCGAAGC GCAGCTCCGT
CAGGCCCAGA AAATGGAAGC CCTCGGCACC CTCGCCGGCG GGATCGCCCA CGATTTCAAC
AACATCCTCG CCGCCATATT AGGCTATACG GAAATGGCCT TGACCGACGT TTCCAGGAAC
AATCCCGCGG GCCACTATCT GGAACAGGTG CTCAAAGCCT GTCATCGTGC GAAGGAGCTG
GTGAGGCAAA TTCTCGCCAC CAGCCGTCTT AGAAAGCCTC AGGAACGCGC GCGCACTCAA
ATTGCGCCGA TCGTCAAGGA GGCCCTGAAG CTGTTGAGGG CGTCCCTGCC CGCCACCATA
GAAATCCGCT CGAACATTGA AACCCAGACG GGCGGCGCCA TGGTCGACCC GACGGAAGTC
CATCAGGTGG TGGTCAATCT GTGCACCAAC GCCTTTCACG CCATGGAAGA ACGGGGAGGG
GTCCTGGAAG TGAGCCTGGC GGAAGTCACG ATCGATGAAG AGGCGGATGC CTCACCGGCG
GGTCTGCGGA GTGGAAATTA CCTTCGATTG ACGGTCGGCG ATACGGGGCA TGGAATTGAC
CCGGCAATTC GGGAGCGGAT TTTCGACCCG TACTTCACCA CTAAGGAAGT GGGCAAGGGC
AGCGGACTGG GGTTGGCCGC GGTCCATGGA ATCATGAAAA ATTACGGCGG CGCCGTTACG
GTGGACAGCG ATCCGGGAGT CGGCACGCGT TTCGACGTCT ATTTCCCGAG CGTGGAAGTT
GCGCAACGGG AGGAGGCTCC GGAGGAGAAA GCGCCTCCAC TCGGGAAGGC GGAGCGAATC
CTCCTTGTCG ATGACGAAGA TGTCCTGGTC GAGATGGGAA AGAGCGTCCT GGAGCATCTG
GGTTATAAAG TGCGCGGCGT GACGGACAGC GTCGAAGCCC TGGAATTGTT CCGAGCTCAG
CCAGATCGCT TCGACCTGGT TATAACGGAC TACACCATGC CCCGCATGAC CGGCGTGGCT
CTTGCCAGGG AAATGATGCG CATCCGACCG GATATCCCGA TTGTCCTGTG TACCGGATTT
TCCGAGCGGG TAACCGAAGA GGCGGTGAAG GAAGAAGGTA TCCGAACACT TGCCATGAAA
CCGCTCGAAA TGCGCGAGAT TGCCGAGGTT ATCCGCGGGA TCCTGGATGA AGAATCCGGC
CCTTGA
 
Protein sequence
MKRSRSLLRI FLWNAVIAVL VALVAAGMLT NLTLRSVEKN LPNTLLEQLH DVARIIEDLA 
DVVSAAELTR AVPSSENLKR LRGEVDAANN AVVRLRNTYV FDNLIQASAI HAVVAPALAD
ARVWLSEGVS GYGPESETTI GVVLLRISKA FHKARALNHA SEEKAQAILN EQRTRLDRFL
FSVNLLFSLA VVITFAMVFL LVFQHILQRR ENEARAERRR AEQSLRESEH KFKTLFNNAG
DGIAIHDLEG RFLEVNQVLC DRLGYSKEEL LRLGLMGIDA SEGSVLLPEW VDELTHKGSA
FVETIHAVRD GSRIPVEVNS RMVDFGGERA ILSMVRDITE RKHAEGALRE SEATLKSIFR
VAPIGIGLLT DGILKQVNDR LCRMVCYSRQ ELVGGSARML YLDQEEFERA GKEEHAQIRH
WGTGTVETLW KRGDGAVIDV LLSSTPIDPT DLAAGVTFTA LDISERKRAE AALSESQARF
RELAELLPET IFEMDADGRL TFVNRNAYDH FGYSKEEIER GVNGYMMISP EDRPKAAENA
RRVMAGERIG LNEYKALRKD GCTFPVIIHS SAKLDDGKPS GIRGIIIDIT ETKKLEAQLR
QAQKMEALGT LAGGIAHDFN NILAAILGYT EMALTDVSRN NPAGHYLEQV LKACHRAKEL
VRQILATSRL RKPQERARTQ IAPIVKEALK LLRASLPATI EIRSNIETQT GGAMVDPTEV
HQVVVNLCTN AFHAMEERGG VLEVSLAEVT IDEEADASPA GLRSGNYLRL TVGDTGHGID
PAIRERIFDP YFTTKEVGKG SGLGLAAVHG IMKNYGGAVT VDSDPGVGTR FDVYFPSVEV
AQREEAPEEK APPLGKAERI LLVDDEDVLV EMGKSVLEHL GYKVRGVTDS VEALELFRAQ
PDRFDLVITD YTMPRMTGVA LAREMMRIRP DIPIVLCTGF SERVTEEAVK EEGIRTLAMK
PLEMREIAEV IRGILDEESG P