Gene Sfum_2908 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2908 
Symbol 
ID4458770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3587081 
End bp3588112 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content62% 
IMG OID639703682 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_847020 
Protein GI116750333 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000550231 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0637331 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGAG TGTTGGGGGT ACTTTTCGTT CTCGTGGCCA TCGTGGCCTT CGGCTTTGCC 
CAGGCGGTTC AGGCGGCGGA TTACAAGGCG GAATACAAGC TTTCCACGGT CCTGGGCAAG
CCTTTTCCGT GGGGGGTGGC CGGCGAGCGC TGGGTCGAGC TGATCAAGGA AAAGACGAAC
GGCCGGATCA ACGTCAAGTT GTATCCGGGC ACCAGCCTGG TGGGCGGGGA CCAGACCAAG
GAGTTCACCG CCATCCGGCA GGGAGCCATC GACCTGGCCA TCGGTTCCAC CATCAACTGG
TCGCCCCAGG TGCAACAGCT GAATATCTTT GCCATGCCGT TCCTGATGCC GGACTACAAG
GCCATCGACG CCCTCACCGG AGGGGAGGTC GGCAAGGAGT TGTTCAAGAT CCTGGAAGGC
AAGGACGTGG TTCCGCTGGC GTGGGGTGAG AACGGATTCC GGGAGCTCAG CAACTCCAAG
GTTTCCATCC GCAAGCCTTC GGACCTCAAG GGCCTGAAGA TCAGGGTGGT CGGCTCGCCG
CTCTTCCTGG AAACGTTTAC CGCCCTCGGC GCCAACCCCA CGCAGATGAG CTGGGCCGAT
GCGGTGCCCG CCCTTTCCAG CGGCGCCGTG GACGGGCAGG AAAACCCCCT GACGGTTTAC
ATGGCGGCGA AGCTTCACAG TGCCGCGAAC CAGAAAAACC TCACCCTTTG GGGGTACGTG
GCCGATCCGC TGATTTTCGT CGTGAACAAG GAAGTGTGGA ACAGTTGGAC GCCGGAGGAC
CGGAAGGCCG TGAGTGAGGC CGCGCTGCAG GCGGGCAGGG AAAACATCGA GCTGGCGCGC
AAGGGGCTGG TGGCCCCCGA CGAGAGCCTG ACCAGGGAGA TCGAGGGGCT CGGCGTCACG
GTGGTCAAGC TGACGGAGGC CGAAAAGGCG GAATTCAGGA AGGCCACCCG GGACGTTTAC
GACAAATGGG CCAAGCAGAT CGGTGCGGAA TTGGTCAAGA AAGCCGAGGC GGCCATAGCG
GGCCGCAAGT AG
 
Protein sequence
MKRVLGVLFV LVAIVAFGFA QAVQAADYKA EYKLSTVLGK PFPWGVAGER WVELIKEKTN 
GRINVKLYPG TSLVGGDQTK EFTAIRQGAI DLAIGSTINW SPQVQQLNIF AMPFLMPDYK
AIDALTGGEV GKELFKILEG KDVVPLAWGE NGFRELSNSK VSIRKPSDLK GLKIRVVGSP
LFLETFTALG ANPTQMSWAD AVPALSSGAV DGQENPLTVY MAAKLHSAAN QKNLTLWGYV
ADPLIFVVNK EVWNSWTPED RKAVSEAALQ AGRENIELAR KGLVAPDESL TREIEGLGVT
VVKLTEAEKA EFRKATRDVY DKWAKQIGAE LVKKAEAAIA GRK