| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2865 |
|---|
| Symbol | |
|---|
| ID | 4458797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 3534294 |
|---|
| End bp | 3536753 |
|---|
| Gene Length | 2460 bp |
|---|
| Protein Length | 819 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639703639 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_846977 |
|---|
| Protein GI | 116750290 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0368958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCCG TCGGGCTTGC GGTTTCCTTG ATCTCCATGG CCCTCCTCGG CCATGAAATC
CTTCTCATGC GCCTCCTCAG CATCGCCCAG TGGCACCACT TCGCAGGTAT GATCATCAGC
CTCGCCCTCC TGGGACTCGG GGCCGCCGGA ACCTTCAACA CCCTGTTTCA GAAATGGCTG
ATCCCGCGGT TTCACCGCGT GTTCTGCCTC AACGCCATCC TGTTCGGCCT GGCGCTCCCG
ACCACCGTCG GGGCGGCCCG ACTCGTTCCC CTCAATCCCC TCGAGATCCT ATGGGATCCG
CGCCAGTGGC TTTACCTGTT CCAGACTTAT CTCATCCTCA TTTTGCCCTT CTTTTTCGGA
GGCAACTGCC TCTCCCTGGC TCTCGCCCGG TTCAAGGAGA ACATCCATCG CGTCTACTTC
TTCGATCTCC TGGGAGCCGG TCTGGGCGCT CTCGGAATCG TCCTCCTCCT TTTTGTCCTC
CCGCCCTGGG AATGTCCGCC GATTCTTTCG ATGGCGGGAT TCGCGGCGGC GGGCCTCGTC
CTCCTGAACG AGAGGGGGCG GCGATTCCGT ATGGCGGGAA TCTTCACGAT CCTGTGCGGC
GCGGTTTTCC CCCTGATCTG GCCGCAGGGC GGGGCATTCC CCAACGTTTC CCCCTACAAG
GGCCTGAGCG CGGCCCTGCT GTCTCCGGGC GCCCGGATCG TCGCCGAGCG CACAAGCCCT
CTCGGCTGGC TGGCCGTCGT GGAAAGCCCG GTCATCCCTT TCCGCCACGC GCCCGGAATG
AGCCTGCACT GCACGGCGGA GCCTCCCGCG CAGCTCGGGA TCTTCGTGGA CGGAGACTCC
ATGAGCCCCA TCACCCGCTT CGACGGCAAC CCCACTTCCC TCGCGTTCCT GGACTGCCTG
ACCTCCGCGT TGCCGTTTCA TCTGCTGAAG AACCCGCGGG TCCTGGTGCT CGGGGCGGGA
GGAGGAATGG ACGTGCTCAC GGCAAGGCTC AACGGGGCCC GGACCGTTGA TGCCGTAGAG
CTCGACGCCA ACGTGATTTC CCTGGTCGGG GATACGTTCG GCGAATACTC GGGCCGGCTC
TACGGCGACG AAAAGGTGAG GCTCCATGCC GCCGACGCCA GGAGCTTCCT TTCCAGGACG
GATACGACCT TCGACCTGAT CCAGGTCTCC CTCCTCGATT CGTTCACGGC TTCGGCCACG
GGGGGACACG CCCTGAGCGA ATCCTATCTG TATACGGTGG AGGCTCTGAC CGATGCCTAC
CGCCGCCTTG CACCGGGCGG CTGTCTTGCC GTCACGCGCT GGCTCAAGGT GCCGCCCCGG
GACAGCCTGA AGCTTTTCGC CACGGCCGTG CAGGCGCTGG AACGGTCGAG CGTCGCAAGC
CCGCAGGGGC AAATGGCTCT CATCCGCAGC TGGAGCACGA CCACACTTCT TGTCAAGAAA
GGGGAACTCT CGGGGAAAGA CCTGGAACGG ATCAGGGGCT TCTGCGCCGA GCGCGCGTTC
GACATCGACT TCCGCCCGGG CCTGGAACCC GGGGAAACCA ACCGGTTCAA CGTTCTCGAT
GAACCGTACC TGTCGGAAGG CGCTCAGGCG CTTATCGGAG AGCGGCGCAA GGAATTCATG
GAACGGTACA AGTTCGCCAT CGAGCCCGCC ACGGACGATC GCCCCTATTT CCTCCATTTT
TTCAAGTGGA GAACGCTGCC CGAGATCCTT TCAGCGAGGG GCCGGGGAGG GCTGCCGCTC
ATGGAATGGG GCTACCCCGT GCTGGTGATG ACGCTGATCC AGGCCGTGGC GCTGAGTCTT
GCCTTGATCC TGGTTCCGCT CTTTTTCCTG GAGCGCGAAA GATCGGCGGG AATGAACGGA
GGCCGCATCG CCGTTTACTT CTCGGCGCTC GGGTTCGCGT TCCTGTTCAT GGAGATGGCT
TTCATTCAGA AGCTCATCCT TTTTCTGGGC CACCCCATCT ATGCCGCATC GGTCGTCATC
GCCGGTTTCC TGGTCTTTGC CGGCCTGGGT AGCCGCTGCG TGGCGGTGCT GAGCAGGGCC
ATGACGCCGA ATGGGCCCAA CGGGAATGTC GTGACCATCC TGGTTGCCGC GGCGGTCGTC
GTGATCCTGT CGGTTCTCTA CGTGATCTTC ATCCCCGGGC TTTTTGGCCG GTTGGCGAGC
GCGGGGGACC CGGTTCGGAT CGTCGTGTCC CTGGTCCTCA TCGCCCTCCT CGCCTTCCCG
ATGGGAATGC CGTTTCCTCT CGGGCTCAAG ATGCTTGGCG AGTCCCAACC GGCCTGCATC
CCATGGGCGT GGGCAATCAA CGGCTGCACC TCGGTCCTCG CCACGGTGCT GGCTTCCCTC
CTGGCCATCC ACCTGGGGTT CAACGCCGTC GTGATCTTTG CGGCGGCGCT GTACGGAGTG
GCGGCGATGA GCGCCCGGGG GCTTCCACAT CGAAACCCCG CCGCGAACGT GCGTGAATGA
|
|---|
| Protein sequence | MIAVGLAVSL ISMALLGHEI LLMRLLSIAQ WHHFAGMIIS LALLGLGAAG TFNTLFQKWL
IPRFHRVFCL NAILFGLALP TTVGAARLVP LNPLEILWDP RQWLYLFQTY LILILPFFFG
GNCLSLALAR FKENIHRVYF FDLLGAGLGA LGIVLLLFVL PPWECPPILS MAGFAAAGLV
LLNERGRRFR MAGIFTILCG AVFPLIWPQG GAFPNVSPYK GLSAALLSPG ARIVAERTSP
LGWLAVVESP VIPFRHAPGM SLHCTAEPPA QLGIFVDGDS MSPITRFDGN PTSLAFLDCL
TSALPFHLLK NPRVLVLGAG GGMDVLTARL NGARTVDAVE LDANVISLVG DTFGEYSGRL
YGDEKVRLHA ADARSFLSRT DTTFDLIQVS LLDSFTASAT GGHALSESYL YTVEALTDAY
RRLAPGGCLA VTRWLKVPPR DSLKLFATAV QALERSSVAS PQGQMALIRS WSTTTLLVKK
GELSGKDLER IRGFCAERAF DIDFRPGLEP GETNRFNVLD EPYLSEGAQA LIGERRKEFM
ERYKFAIEPA TDDRPYFLHF FKWRTLPEIL SARGRGGLPL MEWGYPVLVM TLIQAVALSL
ALILVPLFFL ERERSAGMNG GRIAVYFSAL GFAFLFMEMA FIQKLILFLG HPIYAASVVI
AGFLVFAGLG SRCVAVLSRA MTPNGPNGNV VTILVAAAVV VILSVLYVIF IPGLFGRLAS
AGDPVRIVVS LVLIALLAFP MGMPFPLGLK MLGESQPACI PWAWAINGCT SVLATVLASL
LAIHLGFNAV VIFAAALYGV AAMSARGLPH RNPAANVRE
|
|---|
| |