Gene Sfum_2807 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2807 
Symbol 
ID4458872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3459189 
End bp3460706 
Gene Length1518 bp 
Protein Length505 aa 
Translation table11 
GC content55% 
IMG OID639703581 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_846920 
Protein GI116750233 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATCA TGGACGAAGC CAATCTGAAA ACAAAGGTTT TCGACTCGCT TTCCGTGCCC 
ACCCTGATTT TGAAGCCAAA CAAGATCATA GTGGATGCAA ATGCGCGCTT CCTGGAAAGG
TTCCGTGTCA GTAAAGCGCA AGTCGTCGGG AAAACGTGTC ACGATTTCTT TTATCACCTG
AGAGAGCCGT GTCCTCACGA AACCTGCGCT CTTGCCAGGA CGTTGGAAGA CCGCCAGGGA
CATTCCGCCG TCAAGATTGT CGCAACCGGT GAAGGTGAGG AAAAATGGGA CAATCGTGTC
TTCTCTCCCA TCGTGGATGA AACCGGTGAG GTGAGGTACG TCGTGGAGTG CATTCATGAC
ATGACGCCGG TCAAGACCTT GGAGCGGGAG CTCTCCGATG CGAGGGAATT CACGCAGAAG
ATCATCCTAA GCTCAACCTG TGCAATGATC GCCGCGGACC GGAAAGGCAG AATTCTAATG
ATGAACCCCG CCGCCGAAGA GCTCACCGGG TACTCTCTTA AGGAAGCCCG GGGAAAAGTC
ACGGCCGAGG ATCTCTACCC TCCGGGGGAG GCGAAGAAGG TTATGAAAAT CCTCAGAGAT
GAGCGAATCG GAGGCAAAGG CAAGCTCAAT TGCACCAGGA TCAGCATGGT CAATGCCAGG
GGTGAAGATG TACCGGTGGA GCTGAGCGCC GCGATCATCT ACGAGGGCGA CAAGGAAGTG
GGCACCATGT CCGTGTTCAA CGACCTGAGA GAAAAGTTGC AGCACGAAAA ACAAATGGAA
CAGATGCTTC TCCGTATTGC CCGGGCGGAG AAAATGGCCT CCCTGGGGCA ACTCGCGGCA
GGCGTGGCCC ACGAGATCAA CAATCCGCTG ACCGGGATCA TCTTCTTCTC CAAGCTCGTG
CTGGACACCC TCGAAAAGGA TGATCCCAGG CGTGAGAACC TCGCGGCAAT CTTCGAAGAC
GCCAAACGAT GCGGCAAGAT CGTCACAAAT CTGCTGGCCT ACAGCAGGCA GGCAAATCCC
GGTACCGAGG TCCTCCACAT CCACACGCTC CTCGAGCACA GCCTCAATCT CATCAGGGAT
AGGAAAGCCT TCATGCACAT TCGCGTCGTC AAGGAGCTCT CCAGGGAAAT GATGTTGATC
AGGGGCGACA GGGACCAGCT GAGTCAGGTG ATCGTCAATC TTGTCATGAA CGCCCTGGAT
GCCATGGACC GTAGAGGCAC GCTCACTCTT CGCACCTTTC GGGATAAATC GGCGAAGAAG
GCCTGCCTCG AGGTCTCCGA CACAGGCGGC GGGATTCCGG CCGATAAGCT CTCCGTCATT
TTCGATCCAT TCTTCACCAC CAAGAAACCG GGAAAGGGCA CGGGGCTGGG ACTGAGCACA
GCCCAGAAGA TCGTCACGGA AAATGGGGGC AACATCCGGG TGAAAGAAAC GGGCCGCAGC
GGAACCACCT TTTTGGTGGA ATTTCCCCTT TTTGTGACCG CCGATGAAGA TCATGCCGGC
CGATGCGAGC CTTCGTGA
 
Protein sequence
MDIMDEANLK TKVFDSLSVP TLILKPNKII VDANARFLER FRVSKAQVVG KTCHDFFYHL 
REPCPHETCA LARTLEDRQG HSAVKIVATG EGEEKWDNRV FSPIVDETGE VRYVVECIHD
MTPVKTLERE LSDAREFTQK IILSSTCAMI AADRKGRILM MNPAAEELTG YSLKEARGKV
TAEDLYPPGE AKKVMKILRD ERIGGKGKLN CTRISMVNAR GEDVPVELSA AIIYEGDKEV
GTMSVFNDLR EKLQHEKQME QMLLRIARAE KMASLGQLAA GVAHEINNPL TGIIFFSKLV
LDTLEKDDPR RENLAAIFED AKRCGKIVTN LLAYSRQANP GTEVLHIHTL LEHSLNLIRD
RKAFMHIRVV KELSREMMLI RGDRDQLSQV IVNLVMNALD AMDRRGTLTL RTFRDKSAKK
ACLEVSDTGG GIPADKLSVI FDPFFTTKKP GKGTGLGLST AQKIVTENGG NIRVKETGRS
GTTFLVEFPL FVTADEDHAG RCEPS