Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_2736 |
Symbol | |
ID | 4458930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 3377107 |
End bp | 3379173 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639703507 |
Product | squalene-hopene cyclase |
Protein accession | YP_846849 |
Protein GI | 116750162 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1657] Squalene cyclase |
TIGRFAM ID | [TIGR01507] squalene-hopene cyclase [TIGR01787] squalene/oxidosqualene cyclases |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCCAA TCAGGGGCAA GAGAGGAAGC GCGGCGGATT TCCTCGAAGA AGAGTATCAG TGGGAGAATC TTGCTGACCA TGGCGAATCG GGGCGCACTC CCGGAGGCGG TCATCCGGCC GCGTTGAAGG AGTACGAGGC CGGGAGCGCA ACGGAGCACA CCGGTCATCA CTGCGTTCAT CATCTGGGGG TGCGGAATTC ATGGTTGCGA AAGATCGAGA AGGCCATCGA CAATGCGTGC GGTCAGCTTT TCAAGACTCA ATATGAAGAC GGGTACTGGT GGTCGGAACT GGAATCGAAC GTCACGATCA CCAGCGAGTA CATCATGCTG CTCTACCTTC TGGAGGTGAG CAGGCCCGAG CAGCAGAAAA GCATGGTGAA ATACCTGCTC AATCAACAGC GGCCCGACGG TTCGTGGGGA TTGTACTACG GAGACGGCGG GAATTTGAGC ACCACGATCG AGGCCTATTT CGCGCTCAAG CTTGCGGGTG AGCACTGCGA GTCGGAGCCG ATGAGGAGGG CCCGCGAATT TATTCTGTCC AAGGGCGGCA TCGAGTCGGC GCGGGTATTC ACGAAGATCT GGCTGGCGCT TTTTTCTCAG TACGACTGGG ACAAGGTGCC GTCCATGCCC GTCGAGCTGG TGTTGCTCCC AAGCAGTCTG TATTTCAATA TTTATGAGTT TTCGAGCTGG GCCAGAGGCA CGGTGGTTCC GTTGTCCATT GTGATGTCCA TCCGGCCGCG TTGTCCGTTG CCCGCAAAGT GTTCGATCAA GGAGCTCTAC GTCCCGGGCA GCAAGCACAA GAATTTCGCA TCGTGCACGC ACAAGCTGTT TTTTCTTTTC GACCGTATTG CGAAGGCGTT TGAGCGGCGC CCGGTTCCTT CCTTGCGGAA CAAGGCGGTG CAGGCGGCGG AGACCTGGGT TTTGGATCAC CAGGAGGACA GCGGAGATTG GGGCGGGATA CAGCCGCCGA TGGTCTACTC TGTCCTGGCG CTGTACTACC TGGGGTACCC GCTGGATCAC GAGGTCATCG TCAAGGGAAT AAAGGCGCTT GACGCCTTCT GCATGGAAGA CGAGGAGGGA ACGCGGATGC AGTCCTGTGT TTCTCCCGTC TGGGACACGG CCCTCACCGT TCTGTCCATG CTCGACGCAG GCGTCGCTGC GGAACACCCC GGCCTGGAAA AAGCGGGAAG GTGGCTTTTG GAGAACCAGG TTCTGACGGG TGGAGACTGG CAGATCAAGA ACGATAGTCT TCCGGGCGGA TGGGCGTTCG AATTCTACAA CACCCGCTAT CCCGACGTGG ATGATTCCGC GGTTGTGCTG AGCACTCTGA ACCGCTTCAA TGCGGAGCGG GTCGAAGGGC TGGAATTCGC CAAGTGCAGG GGCATGGAAT GGTGCCTCAG CATGCAGAGC TCCAATGGAG GATGGGCCGC CTTCGACAAG GACAATACTC TCGAGATCCT CAATCGCATT CCTTTTGCCG ACCAGGAAGC GATGGTTGAT TACCCCACCG CCGATGTTAC AGGCCGGGTG CTCGAAGCCA TGGGATATCT CGGATACGAC GGTTCACACC CGCGGGCGCG AAAGGCAATC CAATTCCTGA AGAAGCGCCA GGAACGCGAC GGTTGCTGGT GGGGACGCTG GGGCGTCAAC TACATCTACG GCACTTGGTC CGTCCTCAAG GGGCTGATAT CCATCGGCGA GGACCCCAGG GCGGCTTACA TCAGGGCGGC TGTGCGCTGG GTGAAGGATC ACCAGAATTC GGACGGCGGG TGGGGAGAGA CCTGTGAGAG TTACGAGAAC CCTGAACTGC GCGGTCAGGG GCCGAGCACT CCCTCCCAGA CCGCCTGGGC CCTGATGTCG CTGATCGCCT GCGGGGAAAT GAAATCTCAG GAAGCCAGCC GCGGGATTCA GTATCTGCTC AGAACGCAGA AACGGGACGG CACTTGGGAG GAACTCCATT TTACGGGAAC GGGCTTTCCC AAGCACTTCT ACATCCGCTA CCACAATTAT CGGAATTGTT TCCCCCTGAT GGCTCTGGGG CAGTATCTGC GGGCTCTTGA GCGGTAA
|
Protein sequence | MNPIRGKRGS AADFLEEEYQ WENLADHGES GRTPGGGHPA ALKEYEAGSA TEHTGHHCVH HLGVRNSWLR KIEKAIDNAC GQLFKTQYED GYWWSELESN VTITSEYIML LYLLEVSRPE QQKSMVKYLL NQQRPDGSWG LYYGDGGNLS TTIEAYFALK LAGEHCESEP MRRAREFILS KGGIESARVF TKIWLALFSQ YDWDKVPSMP VELVLLPSSL YFNIYEFSSW ARGTVVPLSI VMSIRPRCPL PAKCSIKELY VPGSKHKNFA SCTHKLFFLF DRIAKAFERR PVPSLRNKAV QAAETWVLDH QEDSGDWGGI QPPMVYSVLA LYYLGYPLDH EVIVKGIKAL DAFCMEDEEG TRMQSCVSPV WDTALTVLSM LDAGVAAEHP GLEKAGRWLL ENQVLTGGDW QIKNDSLPGG WAFEFYNTRY PDVDDSAVVL STLNRFNAER VEGLEFAKCR GMEWCLSMQS SNGGWAAFDK DNTLEILNRI PFADQEAMVD YPTADVTGRV LEAMGYLGYD GSHPRARKAI QFLKKRQERD GCWWGRWGVN YIYGTWSVLK GLISIGEDPR AAYIRAAVRW VKDHQNSDGG WGETCESYEN PELRGQGPST PSQTAWALMS LIACGEMKSQ EASRGIQYLL RTQKRDGTWE ELHFTGTGFP KHFYIRYHNY RNCFPLMALG QYLRALER
|
| |