| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2719 |
|---|
| Symbol | |
|---|
| ID | 4458948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 3360066 |
|---|
| End bp | 3361358 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639703490 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
|---|
| Protein accession | YP_846832 |
|---|
| Protein GI | 116750145 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.985584 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTTCCC TGGCCCCGGT CAAGGTCATC TGGGAATTCC GGTCCGAAGA GCCTCTGGTC
CCGGCGTCCC TGGTCAAAGT GCTCACCAGC TACGCCGCTC TGAAATACCT GAAGCCGCAG
TACCAATTCC GGACGTCCCT TTATGCGCTC GATGAGCCGC GGGGGGATAC CGTCCGAGGC
CACCTCTGGA TCAAGAGCAC GGGGGATATT TTCCTGCTGG GCGAAAACCT GAAGGATATG
GCGCTCCGCT TGAAGGAGCG CGGCATCCGG TTCGTTGAGG GCGGGGTATT CGCGGACAAC
AGCTTCTTCA ACCCGCAGGC TGAACAGATC TGCCTGGACG AACGGTGTGC GAGCAGCTAC
AACCCTGTGG TCTCGGCGAC TTCCATCGAA TTCAACACGA TCGCCTTCAC AGTGTCGGGG
GGAGCCAAAT CGGGCACCGC CCCTCAAGTG AGCTGGTTCC CTCCGGGCGA TTACGTTCAA
GTCGACAATC TGGCCAGGAC GGCCTCCAAA AAGGCCGCCA GAGTCGGCTT GGCGGTCCGG
TCGGCCGGCA TGACCGGGAC GGGACGGGAA CGATTCCGCG TCACCGGGAA AGTCGGCCCC
AGGAGGAATT TCGAATACCG TCTGAACGTC GACGACCCGG CATCTTTTGT GGCTCGTTCC
TTTAAGGAGG TGCTTCGCCG GGAGGGAATC GAGGTCCGTG GCGCCGACGC CGGGCCGGGG
ACGGTCCCTC CCGGGGCAAA ACCCCTGGTG ACTCATGAAT CCCGAGCCCT GGGGGACATC
ATTTACGGAC TCAATCGCTA CAGCAACAAT TTCATGGCCG AGATGCTCCT CAGAAGCCTG
GGCGGGCTGG TCCTCGGGCC GCCGGGAACG GTTGACAAAG GGGTCGAGTT GGTCCGGAAG
TCACTGGTCG GCCTGGGCGT TCCCCCACAC GAGGTACAGT TGAAGAGCGG GTCCGGGCTG
AGCCGTGAAT GCCGGGCCAG CGCCCGGGCG TTCTGCACGC TCCTCGCAAA CGCATATGCC
GATCCGTCCA TCGAACCGGA CTTCATTTCC TCGTTCGCAA CGAACGGCAG TGAAGGAACC
CTGCGCCGCA GGATCTGCAA ACCGGACGTC GAGGTGCGAG GCAAAACCGG AACCCTGCGG
GATGTCGTCG GCTTTGCCGG TTATGTCGCC GGCTGCGGCA GGGGCCCGTA CGTGGTCACC
GTCATTCTCA ACGACGTGAG CAACATCGGA GAAGCAAGAC GCGCGCTCGA CGGATTCCTG
GAACAGGTGC CCCTGATCGC ACCCTCCATG TAG
|
|---|
| Protein sequence | MLSLAPVKVI WEFRSEEPLV PASLVKVLTS YAALKYLKPQ YQFRTSLYAL DEPRGDTVRG
HLWIKSTGDI FLLGENLKDM ALRLKERGIR FVEGGVFADN SFFNPQAEQI CLDERCASSY
NPVVSATSIE FNTIAFTVSG GAKSGTAPQV SWFPPGDYVQ VDNLARTASK KAARVGLAVR
SAGMTGTGRE RFRVTGKVGP RRNFEYRLNV DDPASFVARS FKEVLRREGI EVRGADAGPG
TVPPGAKPLV THESRALGDI IYGLNRYSNN FMAEMLLRSL GGLVLGPPGT VDKGVELVRK
SLVGLGVPPH EVQLKSGSGL SRECRASARA FCTLLANAYA DPSIEPDFIS SFATNGSEGT
LRRRICKPDV EVRGKTGTLR DVVGFAGYVA GCGRGPYVVT VILNDVSNIG EARRALDGFL
EQVPLIAPSM
|
|---|
| |