| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2525 |
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| Symbol | |
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| ID | 4459172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 3110667 |
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| End bp | 3111968 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639703289 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_846638 |
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| Protein GI | 116749951 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00081419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTTT ACGCATCTGA AAAATGCCTT CCTATCGAGT ATTACTTCAA GCGGAAGGAG
CTTCGAGGGG AATTTGACCT CATCGATGAC CAGGTGCTGG ACGAGAGGCT CAAGAGGGCG
AACCTCGGCC TCGAGGAAGA CAGGGATATG GAGGGACCGG AAGCGGAGGA TATCCTTGAG
GCCGCAGCCG AACGGGAGGA AGAGGACGAG GATCTCCTCC CGGAAGGTGT GACGGCGGCG
GGCGAGGATT TCGAGGAAGA TCACGTCACG TGCTATCTGA AGGAAGTTTC CAGCTACCCG
CTGCTGACTC AGGAGAGGGA AACCGAGCTT GCCCAGGTGA TCAGGGAAGG CCAGGAAGAG
TTGGTGCGGA TGGTGTGCGA GTGTTCCACC GAGGACAGGC TGGCCGCGGA TCTGCACCAG
AAAGTCCAAA AACTGCTGGA CAGCGAGAAG AGCTTTCCCG GGGTGCGGGA CAAGATCCTG
AAAGTGATCG TGCGCACTTT CGAACGCGGC ACCATGGACT ATCCGGGAAA CGCGCGGTAC
CGGGAAATGC TCGTCCGAAG CAGGGCGATC ATGCTGGCCA TCGACAGCGC CAAGCAGGAA
ATGGTGAAAG CCAACCTGCG GCTTGTCTTG AGTATCGCGA AGCGCTACCG GGGCCGCGGC
ATGAGCTTTG ACGACCTGAT CCAGGAAGGA AACCTCGGGC TGTTGAAAGC GGTCGGCAGA
TTCGATCACA CCAAGGGAAA CCGCTTCAGC ACCTATGCCA CGTGGTGGGT CAGGCAGAGC
ATCATCAGGG GGATCTACGA CAAGACGCGA ACCATTCGCT TGCCGGTGCA TTTCATTGAG
TTGAAGAACC TCTTTTTCAA AGTGTTCTAC GAGCTCTTGA AAGAGCTCGG AAGGGAGCCC
TCGCCCCAGG AAATCGCCGA ACGGGCCAAA CTGCCTCTTG ACAAGGTGCA GATGGTTCTC
ACGCTCGCCG CTCAGCCCAT TTCGCTCGAA ACGCCGATCG GGGAGGACGA ACAGCGCTTG
GGTGATTTCA TCGAGGATGA GCGGGCCGCG TCGCCGATGG AGGAATGTTC GGACCGGGAG
CTGGCTGAAA TAACCCGTTC CCTGCTGTCC AGCCTGCAGC CTCGCGAAGA AAAGATCCTG
CGGCTGCGCT TCGGCATCGA CGGACAGCCG GCGGAGACCC TGGAAAAAAT CGGAAAGACT
TTCAAGGTGT CCAAGGAGCG CATACGACAG ATCGAGAAAA AGGCGCTTCG AAAGCTCCGC
AATCCGAATC GCCAGAGCTG TCTCAAGACG TTCATGGAAT AG
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| Protein sequence | MKVYASEKCL PIEYYFKRKE LRGEFDLIDD QVLDERLKRA NLGLEEDRDM EGPEAEDILE
AAAEREEEDE DLLPEGVTAA GEDFEEDHVT CYLKEVSSYP LLTQERETEL AQVIREGQEE
LVRMVCECST EDRLAADLHQ KVQKLLDSEK SFPGVRDKIL KVIVRTFERG TMDYPGNARY
REMLVRSRAI MLAIDSAKQE MVKANLRLVL SIAKRYRGRG MSFDDLIQEG NLGLLKAVGR
FDHTKGNRFS TYATWWVRQS IIRGIYDKTR TIRLPVHFIE LKNLFFKVFY ELLKELGREP
SPQEIAERAK LPLDKVQMVL TLAAQPISLE TPIGEDEQRL GDFIEDERAA SPMEECSDRE
LAEITRSLLS SLQPREEKIL RLRFGIDGQP AETLEKIGKT FKVSKERIRQ IEKKALRKLR
NPNRQSCLKT FME
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