Gene Sfum_2379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2379 
Symbol 
ID4459330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2934016 
End bp2938545 
Gene Length4530 bp 
Protein Length1509 aa 
Translation table11 
GC content60% 
IMG OID639703144 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_846495 
Protein GI116749808 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGTACC TGAAGCTGCT GGTCATTCCT CTGGTTTTGG TTGTTGTCTG CGCCTTCCTT 
CTTCATGCGG CCTATGTGGC AGTAAATAAT AAGACCATCG ATCAGCTCAA CGATCTTCAA
CGGATGCTTG CAAAAGAGGC GGCCCTGGGT CTGGAGAGCT ATTTCAACGA CTGCCGGCAC
CATCTCAAGA CGCTGTCCGA GATGAAGGAC GTCATCCATT GGAACGATCA GGGAAAAGAC
CTGCTGCGGA TGTTTCACCG GATGAGCGAA GGCGACATCG AGGTCATTCT GCGAACGGAT
GCGCAGGGCC GGGTTGTTTA TTGCTTCCCG GAAGAATCGA GGGCGGAGGA TCTCGCGCGC
CGGAACATCC CCGACGGAGC CCCCGCGGGG CGGGAACCGG TGGTGAGCGA TCCGCTCTTT
ACCGAGGATG GGTGGTCGGG TATTCCGATC CGAGTGCCCG TGCTGGAAGA CGATACTTAC
ACGGGTACGC TGATCGTTCT GATCCGCTTG GACAAGCTGG CGGAGCGATA CCTGGGGGGG
ATCAAGATCG GAAAGGACGG CTACGCCTGG GCGATCGATC GGAATGGAGT CGAGCTCTAT
TGTCCCGTTC CCGGTCATGT CGGCAAGTCG GTATTTGAAA ATTGCAGGGA TTTTCCCGCC
ATCATCACCA TGGCGAAAGC CATGACGGAG GGTCAATCGG GAGTAACGAC GTACAGCTTC
GATCACATTC GCGGAGAGCT CACCACGGTG TCCAACAAGC ACGCCGTCTT CCAGCCCTTA
CGCATGGGCG GCACTTTCTG GTCCGTTGTC GTCGCCACGC CCGAGAATGA AGTCCTCGGC
ATCATAGACG AGTTCAGGAA CACCTGGTCC TATGTCGTGG GAGTCCTGCT CGTCGGGGCC
GGGATCTGGC TCTACTATCT CACCCGCGCC TTCCTGATCG TTGAAGAGGA GAAGAAGCGC
AAGGTCGCCG AACAGGCCCT GCGTGTGAGC GAAGTCAAGT ACAGGACGCT CTTTGAAAGC
GCCCGGGCGG CAATATGCAT CATTCAGGAC TGGAAATTCG TCGACGCCAA TGAAAGCGCC
CGCGCATTGC TCGGAATTCG CGAAGGAATG GATTTCGACA GTGCAATGGA GAACCTTTCA
CCTTGCGGCC TGCCGGGCGG AGGCGATTCC CGGCAGTTGC TCCGTGAGCG GATCCGGGCC
GTCCTCGCCT CCGGCGCGCC GGAGGCCTTC GAGTTGCGGT TCCTCCGCGG CGACGGCACG
CGGTTGGATA TGTATGCGAG CGTGGACCGT CTCGAACTGG GCGCACAGAC CCTGGTCCAG
GCCATCATCC GGGACATCAC CGCATACAAG CAGGCCATTG AAGCCACTGA GAAGAGCGAG
CGAATGCTCC ACCGGATCAT TCAGGCATCT CCCAATCCCA CCTTCGTGAT CGGGAAGGAC
CACCGCGTGT TGTACTGGAA CGCGGCGCTC GAAAAGTTCA GCGGGATCGG AAGCGAGGAT
ATGATCGGCA CCAACCGGCA CTGGTCTGCC TTCTATGACG GCGAAAGGCC TTGCATGGCG
GATCTGCTGC TCGACGAGGA TCTGAAGGAG TTTTCAAAAA GGTACGGCCA TGCGGCGAGG
AAGTCCGACC TGGTCGCGGG AGCGTTCGAG GCGACTCCTT TTCTGCCAAA CCTCGGAACC
GGTGGAAAGT GGCTGCACGT CACCGCGGGC CCGGTCAGGG ATTCCCGCGG CGCCATCGTG
GGGGCCGTTC AAAGCGTGCA GGACATTACC GAACGGAAAC TGGCGGAATT GGCCCTGCAA
CAGGAAAAGG AGTTCTCCGA CACCCTCATC GACGTCCTGC CGGGCATGTT TTTCGTCCTC
GATACCGAAG GGCGTTTCGT TCGATGGAAC AGGGTCGTCA GGGAAACCAT CGGAACTTCG
GACGAACAAA TGGACGGCCT GGACGCTCTC ATCCCCGTCC TCGCCGAGGA TCGTCACCTC
ATCGCCGGCG CGATCCGGAA CGTTTTCGAG CGCGGGTACG CGGATACGAC CGCCCGGATC
ATCACCGGGC AGAATGAAGT GCGGCATTTC TACTTTTCCG GCAAGAAGAT CGTCATCGGG
AAAAACACCT TCCTCCTGGC CACCGGACTG GACGTCACCG AGCGTCAGAA AGCGGAAGAC
GCACTGATTT CCGCGAACCA GCAACTTTAT GACATCATAG AATTTCTTCC CGACGCCACG
CTGGTTCTCG ACAACGGTAA ACGGGTCATT GCCTGGAATC GCGCCATTGA AACAATGACC
GGGGCCAGCA AGCAGGACAT GATCGGCAAG GGGGACAATG CCTGCATGGT TCCACTTTAC
GGCGGACCGC GACCGCACCT GCCGGACCTT ATCGACGTCG GCGACGACGA GCTCGAATCG
AAATATCACT ATGTCAAGAG AGCGGGGAAC GTCGTTTACG CCGAGACCTT TCTTCCCTGC
GTTTACGGCG GCAAGGGAGC TTACGTCATG GCCAAGGCGG CCCCGTTGTT CGACGCCCAC
GGAAACCGCG TGGGGGTGAT CGAATCCATC CGCGACATCA CTGAATACAA GCAGGCCGAA
GAGGCACTCA GGGAATCCCG GCGGCAACTG GCCGACATTA TCGATTTTCT TCCCAACGCC
ACGTTCGTCA TTGACCGGGA AGGCAGGGTG ATCGCCTGGA ACAGGGCCAT CGAGGAGATG
ACCGGAGTCA ACGCGGCGGA CATGCTGGGC AGGGGCGATT ATGAATACGC CCTGCCCTTC
TACGGCAAGC GGCGACCGAT CCTCATCGAC CTCGTTCTCC ACCCGTTGGG ACAAGAGGGG
GCGGCCTACT CGAAAATCGG AAAAGGGGGA ACGGTTTTCG AGGCGGAAGA GCACACTCCG
ACACTCCGGG GAAGGGGGGC GTACCTGATC GGAACGGCAA GCGTCCTGCG CGACTCCAAG
GGGAACATTG TCGGCGCCAT CGAGTCGTTG CGGGACATCA CCGAACGCAA GCGAATGGAG
GAGGCGCTCG CCCGGGCGGA GGAAAAGTAC CGGTCCATTT TTGAAAATGC CCTGGAGGGA
ATCTTCCAGA CCACGCCCGA AGGCCGATTC CTCAGCGTGA ATCCGTCGCT CGCCCGTATT
TTGGGTTACG GTTCGCCCGA GGAGACCATC CGGAGCGTGA CGGACCTGTC CCGGCAGGTA
TATGTCGATC CTGAACGTCG CCTGGAGCTC CTTCAGCTCA CCTTGGAAAG GGGTATCGTC
CAGGACTTCG AAATCCAGGT GCAACGAAAA GACCGGAGCC TCGCGTGGAT CAAGATCAGC
CTTCGCGGCG TGCGCGATCG CGGCGGGCGA CTGATCTACA TGGAGGGCAC CGCCCAGGAC
ATCACGGACC GCAAGGTCCT CGAATCCCGT CTTCTCCAGG CTCAGAAGAT CGAAGCCATC
GGCACTCTCG CGGGCGGCAT CGCCCACGAC TTCAACAATA TCCTGGCCGC CATCATCGGA
TATACGGAAA TGACCCGGCA GACGGTGGAG CACCCGGACC CGCGCCGTTA CCTGGACCAG
GTTCTGAAAG CCTGCGACCG CGCCCGGAAC CTTGTCGGCC AGATCCTGGC CTTCAGTCGC
AAGGCGGAGA GGGATATCCG GCCGGTGGAC GTGAGATCGA TCGTCAAGGA GGCTCTGAAG
TTTCTCCGCG CCACGCTGTC CTCAACCATC AAGATCCGCC AGAAAATCGC CCCGGGAACC
CACGCCGTCC TTGCCGACCC GACACAGATA CACCAGGTCC TGATCAACCT TTGCACGAAC
GCCGCTCATG CCATGCGCGA AAAAGGCGGC GTGCTCCAAG TCGATCTCGA AAACATCGAC
GTCCGTCCGG GCTCGACGGC TTTCCCTGCG GACCTGCCTT CCGGTCCCTA TTTGAAGCTG
ACCATCAGCG ACACGGGCAC CGGTATCGAC CATGCAATCC TGCACCGGAT CTTCGACCCT
TTCTTCACCA CCAAGAGGCC GGGTGAGGGA ACCGGCCTGG GCCTTTCGGT GGTCTACGGG
ATCGTCAAGG AGTGCGGAGG AACGGTTACG GTATCCAGCG AACCCGGCGC CGGTTCGGTG
TTCAGCGTCT GGCTTCCCGC ACTGGTGGAG GGCGTGGAAG CGGCCGTGGA ACCGGTGGAG
GCCGTTCCCA CGGGCAGCGA ACGAATCCTC TTCGTTGATG ACGAACGCGT CCTGGTGGAA
CTGGCCAGAA CGATGTTGAC GGCCCTCGGT TACACAGTGA CCGCCACCAG CGACAGCATC
AAGGCCTTCG ATATTTTCAA GAACCGGGCG GATGAATTCG ACCTCATCAT CACCGACCTC
ACCATGCCTC GCCTGACCGG GGTGGAACTG GCCCGCGCCG CCCTCTCCGT GCGGCCCGAA
ATCCCCGTCA TCCTTTGCAC CGGCTACACG GAGATGATCA CCGAAGAAGA AGTGAAACAA
GCGGGTATTC GGCAGTTCGT CATGAAGCCG CTCAACACGA AAAACGTTGC CAGGCTCATC
CGCCGGGTTC TGGACGGGGG GAATGCCTGA
 
Protein sequence
MRYLKLLVIP LVLVVVCAFL LHAAYVAVNN KTIDQLNDLQ RMLAKEAALG LESYFNDCRH 
HLKTLSEMKD VIHWNDQGKD LLRMFHRMSE GDIEVILRTD AQGRVVYCFP EESRAEDLAR
RNIPDGAPAG REPVVSDPLF TEDGWSGIPI RVPVLEDDTY TGTLIVLIRL DKLAERYLGG
IKIGKDGYAW AIDRNGVELY CPVPGHVGKS VFENCRDFPA IITMAKAMTE GQSGVTTYSF
DHIRGELTTV SNKHAVFQPL RMGGTFWSVV VATPENEVLG IIDEFRNTWS YVVGVLLVGA
GIWLYYLTRA FLIVEEEKKR KVAEQALRVS EVKYRTLFES ARAAICIIQD WKFVDANESA
RALLGIREGM DFDSAMENLS PCGLPGGGDS RQLLRERIRA VLASGAPEAF ELRFLRGDGT
RLDMYASVDR LELGAQTLVQ AIIRDITAYK QAIEATEKSE RMLHRIIQAS PNPTFVIGKD
HRVLYWNAAL EKFSGIGSED MIGTNRHWSA FYDGERPCMA DLLLDEDLKE FSKRYGHAAR
KSDLVAGAFE ATPFLPNLGT GGKWLHVTAG PVRDSRGAIV GAVQSVQDIT ERKLAELALQ
QEKEFSDTLI DVLPGMFFVL DTEGRFVRWN RVVRETIGTS DEQMDGLDAL IPVLAEDRHL
IAGAIRNVFE RGYADTTARI ITGQNEVRHF YFSGKKIVIG KNTFLLATGL DVTERQKAED
ALISANQQLY DIIEFLPDAT LVLDNGKRVI AWNRAIETMT GASKQDMIGK GDNACMVPLY
GGPRPHLPDL IDVGDDELES KYHYVKRAGN VVYAETFLPC VYGGKGAYVM AKAAPLFDAH
GNRVGVIESI RDITEYKQAE EALRESRRQL ADIIDFLPNA TFVIDREGRV IAWNRAIEEM
TGVNAADMLG RGDYEYALPF YGKRRPILID LVLHPLGQEG AAYSKIGKGG TVFEAEEHTP
TLRGRGAYLI GTASVLRDSK GNIVGAIESL RDITERKRME EALARAEEKY RSIFENALEG
IFQTTPEGRF LSVNPSLARI LGYGSPEETI RSVTDLSRQV YVDPERRLEL LQLTLERGIV
QDFEIQVQRK DRSLAWIKIS LRGVRDRGGR LIYMEGTAQD ITDRKVLESR LLQAQKIEAI
GTLAGGIAHD FNNILAAIIG YTEMTRQTVE HPDPRRYLDQ VLKACDRARN LVGQILAFSR
KAERDIRPVD VRSIVKEALK FLRATLSSTI KIRQKIAPGT HAVLADPTQI HQVLINLCTN
AAHAMREKGG VLQVDLENID VRPGSTAFPA DLPSGPYLKL TISDTGTGID HAILHRIFDP
FFTTKRPGEG TGLGLSVVYG IVKECGGTVT VSSEPGAGSV FSVWLPALVE GVEAAVEPVE
AVPTGSERIL FVDDERVLVE LARTMLTALG YTVTATSDSI KAFDIFKNRA DEFDLIITDL
TMPRLTGVEL ARAALSVRPE IPVILCTGYT EMITEEEVKQ AGIRQFVMKP LNTKNVARLI
RRVLDGGNA