Gene Sfum_2350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2350 
Symbol 
ID4459371 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2885954 
End bp2888377 
Gene Length2424 bp 
Protein Length807 aa 
Translation table11 
GC content60% 
IMG OID639703115 
Productglycoside hydrolase family protein 
Protein accessionYP_846466 
Protein GI116749779 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1449] Alpha-amylase/alpha-mannosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCCGCT ACGTGTGTAT CCATGGCCAT TTCTATCAGC CTCCTCGTGA AAACCCCTGG 
CTCGGCGAGG TGGAGCTCCA GGACTCGGCT TACCCCTTTC ATGACTGGAA CGAGAAGATC
GCGGCCCAGT GCTACGCCCC GAACGCCGCC TCACGGATCC TCGACCATGA GCAGCGGATC
ATCCGGATCG TCAACAACTA CTCGAAGATC AGCTTCAATT TCGGGCCGAC GCTCCTCTCC
TGGATGGAAC GACACCGGCC GGAAACTCAC GAGGCCATCG TCGAAGCGGA TCGACTGAGC
CGGTCGAGGT TTTCGGGGCA CGGTTCGGCC CTGGCCCAGG TCTACAACCA CATGATCATG
CCCCTGGCCA ACGAGCGGGA CAAGTACACT CAAGTCACTT GGGGAATCGA GGATTTCAGG
AGACGATTCG GACGAGACCC GGAAGGAATG TGGCTCCCGG AGTGCGCCGT CGACACGCGA
TCCCTGGAAG TTCTGGCCGA ACTGGGAATC CGCTTCACCG TCCTCGCGCC CAGGCAGGCT
GCAAATGTTC GCAGGCTCCT CCCGGAAGCG GATTGGGAAA ACGTGGAAGA CGCCCGAATC
GATCCGACCA CGGTCTACCT GTGCCGGTTG CCGTCGGGCA GGTCCATCAG CCTGTTCTTC
TATGACGGCC CCATTTCCCG GGAAATCGCT TTTTCGGGGT TGCTGAGCAA CGGCCAGTCG
CTTGCCGAAA GACTCATAAG CGCATTCGAT GACGCCAGGG ACCGGCCCCA GTTGGTGCAC
GCGGCCGTCG ACGGAGAAAC CTTCGGTCAC CACCAGCGAC ACGGCGACAT GGCGTTGGCC
TACTGTCTTC ATTTCGTCGA ATCCGGGGAG CACGCGCAGC TGACCAACTA TGGAGAGTTC
CTGGAAAAGA ATCCTCCGAC CCATGAGGTT GAAATCTACG ACAACTCGTC ATGGAGCTGC
ATACACGGAA TAGAGCGCTG GCGCGAGAAC TGTGGCTGTC ATACCGGCAT GCACGGCGGG
TGGACCCAGT CGTGGAGAGG CCCTCTGCGA CATTCGATGG ACCGGTTGAG AGACGAGGCC
GCCCTGGCCT TCGAGGAGGT CGGTTCTCAG TTCCTGCGGT CTCCCTGGGA AGCCAGAAAC
CGGTACATCG AGGTGGTCCT GGACCGTTCT CCGGAGAATG TGGAACGATT CCTCGCCAAC
CACACGGTGC GCGCGCTCGA CCGATACGAG AAGGTCCAGG TTCTGCAGCT CCTCGAGATG
CAGCACAATG CCATGCTGAT GTACACCAGC TGCGGCTGGT TCTTTGACGA GATCTCGGGA
GTCGAGAGCG TTCAGGTCTT GCAGTATGCG GCGCGAGTCG CTCAATTCGT GGAGCTTCTG
ACCGGCACCC CCGTGGAAGA GGACTTTGCG GGACGGCTGG AGGCGGCGCC CAGCAATCTC
TTCGGGAACG GAGCCAGGGT CTACGAAATG TTCGTCAGGC CCGCGCGGCT GGATCTGCTC
CGGGTCGGAG TCCATTACGC CGTCTCCACG CTTTTTGAAG ACTACCCCGA TGAAACCCCG
ATCTATTCCT ACACGATTCG ACGAGAATGC CATGAGACCA TGGAAGCCGG CAGACTGAGG
CTTGCCATAG GGAGGGCGGT GGTCCGTTCG AACATCATCT GGAGTGAAGA GACCGTCAGT
TACGCGGTCC TGCACCTCGG CGACCACAAC ATCAGCGGCG GCGGGAGGGT GTTTCGGGGC
GACGATGCTT ACACCCTCAT GGAAAGCGAG ATTCGGTCGG CCTTCGACAG GGCCGACGTT
CCCGAAGTGA TCCGGCTCAT GGACAAGCAC TTCGGCACGA ACAACTTCTC CCTTTGGCAC
CTGTTCAGGG ATGAACAAAG AAAAGTCATC GACCAGATCC TGGCCCTGAC CTACAGCGAC
ATCGAAGCGT CCTATCGCCG GATATTCGAG AACACGCACG CCGTGATGAA CTTCCTTCAG
GGCCTGCAGG TGCCTCTTCC CAAGTTCATC CTGGCGGCCG CCGAGAGGAT CGTCAACCTC
GACCTCGCGC GGCTCTTTGA AACGGAAGCG ATGGACCACG CGAGACTGGA GTCTCTCCTC
TCCGTCGCTC AACGCTGGGG GCTCGATCTG GACCGTGAAA AGCTCGGCTT CAATGCGGGC
GCGTGGATCA CCGGCGCCAT GGAAAGACTC CTGGAAAATC CCGAGGAAAA GGAACGCATG
GAAGAAATCG CCCGCGTCCT CGGCCTGTTG CAGGCGGCGG CCGTGCCGTT GGACCTCTGG
GGGGCTCAGA ACCTTTACTA CTCCCTGGGT GAGTCAACCC ACGGGAGGAT GAAGAACGAG
GCGGGGGGTC GAGGCGAGTC CGCCGAGGAA TGGGTCCGTT CCTTCGATCA GCTCGGACGC
CACCTGAACG TGGTGATGCC ATGA
 
Protein sequence
MTRYVCIHGH FYQPPRENPW LGEVELQDSA YPFHDWNEKI AAQCYAPNAA SRILDHEQRI 
IRIVNNYSKI SFNFGPTLLS WMERHRPETH EAIVEADRLS RSRFSGHGSA LAQVYNHMIM
PLANERDKYT QVTWGIEDFR RRFGRDPEGM WLPECAVDTR SLEVLAELGI RFTVLAPRQA
ANVRRLLPEA DWENVEDARI DPTTVYLCRL PSGRSISLFF YDGPISREIA FSGLLSNGQS
LAERLISAFD DARDRPQLVH AAVDGETFGH HQRHGDMALA YCLHFVESGE HAQLTNYGEF
LEKNPPTHEV EIYDNSSWSC IHGIERWREN CGCHTGMHGG WTQSWRGPLR HSMDRLRDEA
ALAFEEVGSQ FLRSPWEARN RYIEVVLDRS PENVERFLAN HTVRALDRYE KVQVLQLLEM
QHNAMLMYTS CGWFFDEISG VESVQVLQYA ARVAQFVELL TGTPVEEDFA GRLEAAPSNL
FGNGARVYEM FVRPARLDLL RVGVHYAVST LFEDYPDETP IYSYTIRREC HETMEAGRLR
LAIGRAVVRS NIIWSEETVS YAVLHLGDHN ISGGGRVFRG DDAYTLMESE IRSAFDRADV
PEVIRLMDKH FGTNNFSLWH LFRDEQRKVI DQILALTYSD IEASYRRIFE NTHAVMNFLQ
GLQVPLPKFI LAAAERIVNL DLARLFETEA MDHARLESLL SVAQRWGLDL DREKLGFNAG
AWITGAMERL LENPEEKERM EEIARVLGLL QAAAVPLDLW GAQNLYYSLG ESTHGRMKNE
AGGRGESAEE WVRSFDQLGR HLNVVMP