Gene Sfum_2298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2298 
Symbol 
ID4459389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2821632 
End bp2823344 
Gene Length1713 bp 
Protein Length570 aa 
Translation table11 
GC content58% 
IMG OID639703064 
ProductTPR repeat-containing protein 
Protein accessionYP_846415 
Protein GI116749728 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCCGC AGCGAAGCCG ATTTCCTGCC TCACTGTGGC ACGAACCGGC TCTCCATCTT 
TCGGTCGTTG CTCTGACCGC CTTTCTATCC TATTCCAATA CCTTCGACGC ATCGTTTCAT
TTCGACGATG TGAGAAACAT CGTTTCCAAT TCCATCATCC GGGATTTCGG CAACTTCATC
GAACCGTCAC GGGTTGCGGA TCACCCGTAT TACTTCGACT TCAAGATGAG ATACGTCGGT
TTTCTCACCT TTGCGTTGAA CCATGGTCTT CATGGATTGA AACTTGCGGG ATTTCACGCG
GTGAACCTAC TGATCCATGT CGTCAACGGT TTTCTCGTCT ACTTTCTCGT GCTCCTGACT
TTCAGGACCC CCGGGATGCG TTCCACGGTC ATGGGCGGCG AGCGACACGA CGACGCCCAA
ACCGGCCCAC GCCGCCTCAT CGCGTTCTTT GCCGCCCTCT TTTTTGTCTC GCACCCGATT
CAGACACAGG CCGTGACCTA TGTCGTGCAA AGATTCGCTT CCCTGGCCAC TTCGTTCTAC
CTGGCAGCGG TTGTGTCATA TGCCGGGAGT CGCCTCAACG CAATGCATCG TCGCCCCGTC
GCGGCCTGTT GTCTTTATGG GCTGGCGCTG TCTTCGACCG TCCTTGCCAT GAAGACCAAG
GAGATATCCT TCACCATTCC AATCATCGTG GCGCTCTATG AATACCTGTT CTTCGGCAAG
ACTTCAGGCA GCCGGGCCGC AAGATTGGCG CGGCTCGTCC CCTTCATCCT GACCTTCGCC
GTGATACCGC TCGGCGCGGT CGATTTCGAC GGCGATGCAT CCGTCCTGAG TCAGTTGGGC
GACCGTTCGA GAGTGCTGAC CGGCATGTCC AGGCACGACT ATTTTCTGAC TCAGCTCACC
GTAATCCCGG TCTATATCGG CTTGATCTTT CTCCCTCTCG ACCAGAACCT CGACTACGAT
CATCCGATCC ACACGGTGTT TTTGAATTCG CAAGTCGTGT ACTCCACCCT GCTGATTCTC
TTCGTGCTGT TCGTCGGGGC CTTCCTGGCG AGTCGCTCGC GCTCCGGTGC GGGAGGATGG
AGGCTGACCG CGTTCGGGAT TTTCTGGTTT CTTGTGGCTC TGTTGCCTGA GTCCAGCATT
GTGCCGATCG TTGACGTGAT CTACGAGCAC CGGGTGTACC TGCCGTCGGT GGGGGCGTTT
GTGGCCATTT CGTCCGGGGT CGTTCTGTTG GCCGAGAAAT ACCGGGCGGG ACAACCATGG
GCAATGCGGG CGGTGTGTTT GTTGCTTGGC GTGGCGGTAC TTCTTTTTTC TGCGATGACG
CACGCAAGGA ATGCCGTCTG GAAGGATGAG ATCACCTTGT GGGAGGACGT CGTCTCAAAG
AGCGGGAACA AGGACAGGGC CCGAAACACC CTGGGGGCCG TCTACCTGGA GTCGGGCCGG
CTCGATCGGG CGGAAGCCGA GCTCTTGAAG ACCCTCGAGA TAAACCCACG GTACTGGGCC
GCGCACGTCA ATCTGGGCAG TTGCTACATG AGGAGGGCCG AATCGGCGCG GCGCGAGGGC
GGTTCATCCG AGCGGGTGCT GGAGTTGGTC GACAGGGCGA TTGCCTCCTA TCGGCATGCC
CTGACGATCG ACCCCGGCAA TGAAATGATC GATTCGTTGA TCGAATCGGC TTACCGGACC
CGGCATGTTC TGACGACGAA TGCTGAGAGG TGA
 
Protein sequence
MIPQRSRFPA SLWHEPALHL SVVALTAFLS YSNTFDASFH FDDVRNIVSN SIIRDFGNFI 
EPSRVADHPY YFDFKMRYVG FLTFALNHGL HGLKLAGFHA VNLLIHVVNG FLVYFLVLLT
FRTPGMRSTV MGGERHDDAQ TGPRRLIAFF AALFFVSHPI QTQAVTYVVQ RFASLATSFY
LAAVVSYAGS RLNAMHRRPV AACCLYGLAL SSTVLAMKTK EISFTIPIIV ALYEYLFFGK
TSGSRAARLA RLVPFILTFA VIPLGAVDFD GDASVLSQLG DRSRVLTGMS RHDYFLTQLT
VIPVYIGLIF LPLDQNLDYD HPIHTVFLNS QVVYSTLLIL FVLFVGAFLA SRSRSGAGGW
RLTAFGIFWF LVALLPESSI VPIVDVIYEH RVYLPSVGAF VAISSGVVLL AEKYRAGQPW
AMRAVCLLLG VAVLLFSAMT HARNAVWKDE ITLWEDVVSK SGNKDRARNT LGAVYLESGR
LDRAEAELLK TLEINPRYWA AHVNLGSCYM RRAESARREG GSSERVLELV DRAIASYRHA
LTIDPGNEMI DSLIESAYRT RHVLTTNAER