| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2289 |
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| Symbol | |
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| ID | 4459415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 2811805 |
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| End bp | 2814102 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639703055 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_846406 |
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| Protein GI | 116749719 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGGGTG AAGCCAACTG GGGCATGATT ATTAGGACTT TTAGAATCCA GATCACTGCC
CCGATCATCC TAATCAAGAC CGGGAACCGA ACCGGGGCGG CACGACCCGA AGGGATGCCG
CACAGCGCCT CGGACGTTTC GACCGGAGGG GAGGCTCGGA CCATGAAGCA TCAGGAAAAG
ACCCTTCTCA TCGTTTCCAT CGACAGGAAC GTGAACAACT TCTTGTGTAC CATCATCAAC
AACATCATCG GGGGGGAAGT GAAGGTGCGC AGCAAGACGT TCCAGGAGTG CGCCGCCGCG
CCGCCGCGGA CCGACGTGGT GATGACGTCG GGCGCCTTTC TGCTGCCGCG CCTGCGATCG
ATTTACCCCG ATCTGCCGAT CGTGGCGCCC AAGCGGTTGA TCACCGGCTA CAACCTCGAG
AAGGTGCTCA TGCTTCCCCG CGCGTCCAGG GTGCTCGTCG TGAACGATCC CAGGGCGGCC
ACCGAGGAAA CCGTCGATTC GCTCAAGAGC CTCGGGATCA CCCATCTCGA CTACGTGCCC
TACTGGAGGG GCTCCAAGCG GAGCCTGGGG GACATCGCGG CCGCCATCTC CCCCGGGATG
ACCCACCTGT GCCCCGGCGA AATCAGGCGG GTGATCGACA TAGGGCCGCG CATCATCAGC
ATCCACTCTT TTCTGCAGTT GCTCCTCGCC CTGGACCTCG ACCCCGGCTA CGTGGAGAAC
TTCGCCACCT ACTATCACAA CTTCCTGATG GAATCGAGCC GCAAGCTGGC CGCGGTCCTC
GAACAGTCCG AGCTGCTCCG CAGATACCAG GAAGTCATCC TCAACCAATT CGAGGACGGT
CTGCTTTCGG TGAAGGAAAC CGGCCGAATC GACATTGCCA ACCAATCGGC GGCCCGGCTT
TTCAGAAAGG ACATCGACGC CATACTCGCC ACGAACATCA ACGATCTTTT GGCCGGCTTC
AAGCACACCG TCAATCTCAC GGGCAAGTCG TCAAAGGATT CCGGTTCGTC CTCCATTTAC
GACCATGACG GCAAACAGAT CCTGATTCAG AAGATCCCGG TGGTGAGCGA GAACGAGGTC
CGGGAGATCT ACACCTTCCG GGAAATCGCC CGCCTCCAGC GCCTGGAAAA GGATGTACGG
CTGCACCTCG CGCGCAAAGG GCATGTCACC AAGTACGGAT TCGACGACAT CTGGACCCTG
AACGGGGCCG TCGACGATTT GAAGGAAAGA GCGCTGCAGT TCGCCGCCAC GGAAAAGAAC
ATTCTCATCA CGGGCGAGAG CGGAACCGGA AAGGAGCTGT TCGCGCACGC CATCCATCGG
AGCTCGCCAC GGCGGGACGG GCCGTTCGTT GCCGTCAATT TCGCCGGGAT TCCGGAGGGA
TTGATCGAGA GCGAGCTGTT CGGATACGAA TCGGGCGCCT TCACGGGGGC CAAGAAGGGG
GGCAAGACCG GGTTTTTCGA GCAGGCTCAC GGAGGCACGA TTTTTCTGGA CGAAATCGGC
GACGCGCCGC TCAACGTCCA GTCCAGGCTG CTTCGAGTCC TCCAGGAAAA GGAAATCATG
AAGGTCGGAG CCGACCGGAT CATCCCCATC GACGTTCGCA TCATTGCGGG AACCAACCGC
AACCTGCGTG AGGCGATCGC CGAAAAGAAG TTCCGACGCG ACCTGTATCA CCGTTTGAAC
ACTTTGCCGC TTGATATTCC GCCGCTGCGC GAGCACTGCG AAGACATTCC CTACGTCCTC
AACCGGTACC TCGAAGAACA ATACGGCAGC CGCAAGGCGT TTTCCCCGAA CGTCGCCGAG
TGTCTGCGGC GCTACGGCTG GCCGGGAAAC GTGCGGGAGC TGCTCAATCT TGCCGATTAT
CTTCAGATTT CATCCAGAAA CGCCGCAGTG GTCGAACTGG AACATGTGCC GCGGAGTCTT
TCGGAAACCT TCGCCCTCGA CCGGCGACCG GCCCGGGGAG GGAGCGACGG CGACCAGCGC
GACACCGTCC GGCGCCTGTT GGAGTCGGCG TGCGCGTCGA TGGAGGAATT GTCGGGGCTG
CTCCACGTTC TGCGCGAACG CAAAAGGCTG CTGAACGGCA GAAGAACACT CATGCGTGAA
CTCGGCAGCC GGGGCCATTT CGTCAGCGAA GGAAGAATGA AGCGATATCT GCGGCTTTTG
AGGAACGATG GACTGATTCG AGTGGGAACC ACCAAGCAGG GAACGACGCT CACTCCGAAA
GGCGAAGGAC TGCTGGAATT CCTCATTGCC GAGCGAGGCG GCTCTTCCGG ACCGCCCTTT
CCCGATTGGG ACAATTAG
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| Protein sequence | MKGEANWGMI IRTFRIQITA PIILIKTGNR TGAARPEGMP HSASDVSTGG EARTMKHQEK
TLLIVSIDRN VNNFLCTIIN NIIGGEVKVR SKTFQECAAA PPRTDVVMTS GAFLLPRLRS
IYPDLPIVAP KRLITGYNLE KVLMLPRASR VLVVNDPRAA TEETVDSLKS LGITHLDYVP
YWRGSKRSLG DIAAAISPGM THLCPGEIRR VIDIGPRIIS IHSFLQLLLA LDLDPGYVEN
FATYYHNFLM ESSRKLAAVL EQSELLRRYQ EVILNQFEDG LLSVKETGRI DIANQSAARL
FRKDIDAILA TNINDLLAGF KHTVNLTGKS SKDSGSSSIY DHDGKQILIQ KIPVVSENEV
REIYTFREIA RLQRLEKDVR LHLARKGHVT KYGFDDIWTL NGAVDDLKER ALQFAATEKN
ILITGESGTG KELFAHAIHR SSPRRDGPFV AVNFAGIPEG LIESELFGYE SGAFTGAKKG
GKTGFFEQAH GGTIFLDEIG DAPLNVQSRL LRVLQEKEIM KVGADRIIPI DVRIIAGTNR
NLREAIAEKK FRRDLYHRLN TLPLDIPPLR EHCEDIPYVL NRYLEEQYGS RKAFSPNVAE
CLRRYGWPGN VRELLNLADY LQISSRNAAV VELEHVPRSL SETFALDRRP ARGGSDGDQR
DTVRRLLESA CASMEELSGL LHVLRERKRL LNGRRTLMRE LGSRGHFVSE GRMKRYLRLL
RNDGLIRVGT TKQGTTLTPK GEGLLEFLIA ERGGSSGPPF PDWDN
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