| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2227 |
|---|
| Symbol | |
|---|
| ID | 4459493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 2730874 |
|---|
| End bp | 2736735 |
|---|
| Gene Length | 5862 bp |
|---|
| Protein Length | 1953 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639702993 |
|---|
| Product | alpha-2-macroglobulin domain-containing protein |
|---|
| Protein accession | YP_846344 |
|---|
| Protein GI | 116749657 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2373] Large extracellular alpha-helical protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACCC GCCCGGAATC AGTCCTTTCT TCCGTTCACG GTCAACGTTT CCGCATGACG
TTGTTCTCCG CATGCGCGCT GATGCTGTTG CTGCTTTCGA CGGTGTTGTC CCCGCCTTTT
CCGGTCCCCG GCATGGCGGC GGAAACCGCC GGGGGCAAAG GCGGAGTGGA GTTGCGCGTC
GTGCGGATCA CTCCATCGGG CGAAGACGTG CCCCCCGGCC GCCAGGTCGT ATTCGAGTTC
GATCGGGCCG TGGTTCCTCT GGGACGCATG GAACGCGACC CTTCGGAGAT CCCCATCGGG
TTTGAGCCCG CGCTGGCGTG CAAATGGAGA TGGCTCAATC CGAAGACGCT GGCCTGCCAG
TTGGACGAAA AGGCCGCGAC GCTGCCTGCC ACGCGCTACC TTTGCACCGT TCGGCCGGGG
ATCAGGGCGG AGGATGGCGC CACGTCGTCC GGGGAACTGA CGCACACCTT CCTGACCGAA
CGACCGCGCG TGGTGGACGC CACGGTGAGG ACCTGGCTCG CTCCGGGGAC GCCTCAATTC
GGCGTGCGCT TCAACCAGCC CGTTCGACTG GCCTCCGTAA AAGCGCACCT CTATTTTCGT
TCCGAAAGCG GGGAGCGCAT ACCGGCTGTG GTTTCCGAAG AAACCGAAAC CTATCGCTAC
ACCAACTACA GGCGGGGCAG CGCCTGGATT CTCCGGCCCG GCAAAGACCT TGCCTCGGGA
AAGGACTTCG ACCTCATGGT CGAGCCGGGT CTGGCCGGCA CGGACGGCCC GGAACCGGGT
GTGGAGAAGA GAAAAATCGT GTCCTTTCAG ACCTTTCCGC CGTTTCGCCT GATCGGCGTG
AAGTGCAAGA CTCTGGCCGG CAAGTCAGTG GTCGTTCGCC CCGAGGATCC TCCGGCGGGC
AGGCCGCGGT GCAACCCGAA CGAGGAAATT TCCCTCCTGT TCACGGCTCC GGTCTTGGCG
GACAAGGCGC GCGACGGGCT GCGGTTCACA CCGGCTCTTC CCCGGGGCGA CGAAGACACG
GACCCCTGGG ACGCCACTTC CTCCTATTCG CGCCTGTCCG ACCCGCACAA GAAGAACCAG
GCCTACGACC TCCAACTCCC GTGGCTGAAG CCGTTTACCG ACTACAGTCT CAAGGGGCGG
CCGGGAGGCA TTGCCGACGA ATTCGGCCGG ACGCTTGCCA AACCCGTCGA CCTGCAGCTT
TCCACCGACC ACCGTCCGCC GGACTACGTG CTGTACAAGT CCATGCCCGT TCTCGAGAAG
TATCTCGACA CCGATGCGCC CGCTCTCACC ACGAACATCA ACCAGATCGA CCTCTCCTAT
GAAACCCTGA CGACCGAAGG GAAGACCGCG CGGCAAACGG CGGCCGTTCC CGTGAAAAAA
CCTCTCGATT CGACGGCGGC GGTTCCGCTG GGCATCCGCC GGATGCTGTC CGGGAAACCG
GGCGTGGCGA CGGGCCGGTT GAGCACCCAG CCGCCCGTGG GGGGCAAGGA GACGGGGGAC
AAGTGGTTCT TCGCGCAGGT TACTCCCTAT TCGGTTCACG TCAAACTCGG ACACCACAAC
ACCCTGGTGT GGGTGACGGA TCTCAAGACC GGCAAACCGG TCATGGGCGT GGACGTCCAA
ATCTACAAGG ACGCCTACAA GGTCCTGACT TCATCCCCCC GGAGCCTCTC GCGAGGAAAG
ACGAAACCCG ACGGCACGGT GGAGCTTGCC GGAACCGCCA CGCTCGACCC GGACCTCAAG
TTGAGCCATT CCTACAAATT CGATTCCCCT CACTTGTTCG TCCGGTGCGA GAAAGGCGAG
GACCTGGCCG TGATGCCGCT GGTTCACGAC TTCCGCGTCG ACGCCGAAGG AGCCAATCAC
GACTACATTC CCAGCTATCA GCGCGTCCGC CACGGACACC TGCGGGCGTG GGGAGCGACG
GCCCAGGGGA TCTACAAGGC GGGCGACACG GTTCAATACA AAATCTACGT CAGGGATCAG
GACAGCCACC GCTTTGCCCC GCCCCCGAAG GACCAGTACA GCCTGAAGGT GGTCGACCCC
GTGGACAAGG TCGTCCATGA GCGTGAAGGG ATCGTTCTGT CCGAGTTCGG GGCGTTCGAC
GGCGAGTTCG CGGTTCCGAA GACCGGGGCC GTCGGCTACT ACCGGTTCGT GCTCAAACCC
GCGTTCATCG AGGAGGACCT GGAGCCTCTG AAGGTTCTCG TAAGCGATTT CACGCCCGCG
CCGTTTAAAG TCGAAACCGA GCTCAGCGGC AATCTCTTCG GGTCGGGAGA TGCCGTCAAG
GTTTCCACCC GTGCCCGGAT GCACGCCGGA GGTCCCTACG CCGACGCGGA TACCCGCATC
ATGGCCTATG TGCAGAGCCG GCCGTTCGAG CCGCAGAACC AGGCGGCGCG CGGCTATCAA
TTCGATGTCC AGGAGGGATC CGAGCATCAT GCCCCTTCCA CGGAGATGGT TCACCAGGCT
CAGAAGAAGC TCGACAACGA CGGGAACCTG GAGACGGAAT TCAAGCTCGC CGAACTGGCC
ATTCTCTATG GCCGGCTGAA CGTGGAGAGC GCGGTTCGTG ACGACCGTGG AAAATTCGTT
GCGAACAAAG CGGCCGCAAC CTACTACGGC AGGGACAGGT ACGTGGGCAT GCTTCTGGAC
GGCTGGGTCT TGCAGGAAGG AAAACCGGCG AAGGCCGGGT TCCTGGTGGT GGACCAGAAC
GGAAGCCCGG TGACCGGAGT GCCCCTGCAC ATCAAGGTGG AATGGGAGCA GACGAAGGGT
TCCCGAGTCA AGGGCGCCGG GAACGCCTAC CGCACCGAGT ACGTCACCGA GTGGGTTGAA
ACCGAAAGCC GGGACGCCGT ATCCGCCTCC GCGCCCGGTC AGTTCGAGTT CACCCCGAAA
CGTTCCGGGG CGTACCGCAT CACCGCTGCC ATCAACGACA CCCGGGGACG GCCGCACGAG
ACCAGCCTGC GCCGCTGGGC GACGGGAAAG GGCTACGTCC TGTGGGAATC GGTTCCGGGC
AATCTGCTCA ACGTGTCTCC CGAAAAGACG GAAGTCCGCG TCGGCGAGAC TGCCCGCTTC
CTTGTGCAGA ATCCCTTTCC GGGAGCGCAG GCGCTGATCA CCGTCGAGCG CTTCGGCGTG
CTACAGAGCT GGGTGAAGAC CCTGGCGAGA AGCACGGAAG TCGTCGAGAT CCCGGTGCTT
CCCGACTACC TGCCGGGTTT TTATCTTTCG GTCCTGGTGA CCTCTCCCCG GGTGGACAAG
CCGCTCAGCC CGGAAGGCGA CGACCTGGGC AAACCGACCT TTCGCATGGG CTACGCGAAA
ATCGACGTCA AGGATCAGTA CAAGGAAATC ACCGTAAAGG CCAAACCGGA AAAGGAAGAG
TACAAACCGG GAGACACCGT CACGGTGGAG CTCGAAGCGC GTCCGCGCAA TCTCAGGCAG
GGAGAGGCGG CGCCGCCCGT CGAACTGGCG GTGACGGTGC TCGACGAGGC GGTATTCGAT
CTCCTGATAC AGGGCAGGAA AGCCTACGAT CCTTACCTGG GGTTCTTCCA GGAAGTCGAC
GACCTGGACC TTGCCAACTA CAGCCTGCTC ATGCACCTGG TGGGCAGAGA AAAGCTGGAG
AAGAAAGGGG CCAGCCCCGG CGGCGGAGGG GGATTCGATC TCGGGTTGAG ATCGGTGTTC
AAATTCGTGA GCTACTGGAA TCCCTCGGTG CCGGTGGACG CTGAGGGCAA GGCCAGGATC
CGGTTCAAGG TGCCGGACAA CCTCACCGGC TGGAGGGTCC TTGCCATGGC GGTAACCCCG
GACGACCGGA TGGGACTCGG CGACACCACG TTCCGCGTGA ACCAATCCAC GGAGATAAGG
CCCGCCCTTC CCAACCAGGT GATCGCGGGG GACGGCTTCG AAGCGGGCTT CACCGTCATG
AACCGCACCG ATGCGCCGCG CGTCATTGAA GTCTCCATCG AGGCGTCGGG ACCGGTCGAG
CTCAAGGATG GCGCTCCGCC GAAGATCGTC CTGCAGATCA CGGCCGAGCC ATTCCGGCGG
CAGTCGGTCC GGTTGCCGCT CAAGACGACG GGACCGGGTG AGATCGTGTT CTCCGCCCGT
GCCGGTGACG AACGCGACCG GGACGGGTTG AAACAGACCT TGAAGGTGCT TCCGCGCCAG
TCCCGGGAGA CGGTGGCCCT GTATGGATCG ACCGAGGAAG GAGAGGTGAG CCGAAACGTC
GCCTTCCCCG AAAACCTGCG TCCCGAAATG AGCCGGCTGG CCGTAACGCT TTCCCCGACC
GCCCTCGCGG GGCTGGACGG GGCCTTCGCC TACATGAAGC AATACCCGTT CAGTTGCTGG
GAACAGAAGC TGGCCGTCGG CGTGGCGGCA GCCCTCTACC CGCAGCTCAA GCCACACCTG
GGCGAGTCCT TCTCGTGGGA CGAGAGCGAA GCGCTCGTCG GGAAAACCAT CGCTTTGGCG
GTCGAATACC AGGCACCTAA CGGAGGCATG ACGTTCTACA CGCCCAAGAA CGAATACGTG
AGCCCCTATC TGAGCGCCTT CACCGCCCTT GCCTTCAATT GGTTGAGGGA ATCCGGCCAT
GAGATCCCCG GCGCGGTGGA AAAGAAGCTG CATGAGTACC TGCAGGGGTT GCTGCGCCGC
AACGAAACCC CGGAATTCTA TTCGCAGGCC ATGGCGTCGA CGGTTCGCGC GGCGGCGCTG
GCGGTCCTGG CGGAAAGCGG GAAGCTCAAG GCGGAAGACC TCGACCGGTA TCGTGACCGC
GTCAAGGAAA TGAGCCTGTT CGGAAAAGCC ATGTATTTGC GCGCCCTGTT GCGGGTGCCG
ACGGCCCGGA CGCCGCAGCG GGAGGTGCTC GAAGCCATCC TGGCCCATGC CGACGAGACC
GGCGGGAAGC TCCTCTTCAC CGAGACGCTC GATTCCGGGT TTCGCTGTTT CCTGGGATCG
TCGATGCGCG ACAACAGTGC CGTCTTGAGC ACCTTCATCG CCTACCAGGC CGCCAATCCG
GCGGCATCCG GCCTGGGCGA CATGTCCGCG CGGCTCATGC GCGCCATCGT CGAGCAACGC
AAAGGCCGCA ACCACTGGCA GTCCACGCAG GACAACCTGT TTGCGATGAA GGCGCTGGCC
GACTTCGCCC GTGTCTACGA AAAAGCGGAT CCGGACATGA GTGTTTCGGC ATTCCTGGAT
GCGACCCCCC TTGGAACCGC CGAGTTCAGG AAGAGCACCG ATCCGCCCGC CCTGCTGGTC
CGGCCGCTGG AGGCCGCCGA TCCCGGGCGC AAGGCGGTGG TGAAACTGGA ACGCAAAGGA
ACGGGGCGCC TCTATTACAC TACCGCCCTG TCGTATACGC CTCGGGAGCC GAGCCGGGAG
TCCGTGAACG CGGGCATCGA GGTCGGGCGG GAATACAGTG TCGAGCGCAA CGGCTCGTGG
GTGCTGCTGA AGAGCCCGAT GGAGATCAAG ACCGGAGAGC TGGTCCGCAT CGACCTCTTC
GTCTCGGTTC CCGCCGAGCG ATTCTACGTG GTCGTCGAGG ACCCGCTGCC GGGCGGCCTG
GAACCGGTGG ACCGCCAACT GGCCACGGCT TCGACGGTGG ATGCGGCCAA GGGGGAGGCC
GCCGTACCGG AGGGGTCCTT CCTGCGCCGG TACAGCGACT GGCTCGAGTA TGGGGGCTCC
CGGTGGAGCT TCTACCACAG GGAACTTCGG CACGAAGCGG CGCGGTTCTA TTCCGAACGG
CTCCCCGCGG GCAGGTATCA CCTGTCCTAC ACGGCCCAGG CGATCGCTCC GGGAGAATTC
GTCGCCCTGC CTGTCCGTGC CGAGGAAATG TACGATCCGG ACGTCTTCGG CAAGGGGCTC
CAGGAAACTC TCATCGTTCG ACCGGGGGAG AAAACGGATT GA
|
|---|
| Protein sequence | MSTRPESVLS SVHGQRFRMT LFSACALMLL LLSTVLSPPF PVPGMAAETA GGKGGVELRV
VRITPSGEDV PPGRQVVFEF DRAVVPLGRM ERDPSEIPIG FEPALACKWR WLNPKTLACQ
LDEKAATLPA TRYLCTVRPG IRAEDGATSS GELTHTFLTE RPRVVDATVR TWLAPGTPQF
GVRFNQPVRL ASVKAHLYFR SESGERIPAV VSEETETYRY TNYRRGSAWI LRPGKDLASG
KDFDLMVEPG LAGTDGPEPG VEKRKIVSFQ TFPPFRLIGV KCKTLAGKSV VVRPEDPPAG
RPRCNPNEEI SLLFTAPVLA DKARDGLRFT PALPRGDEDT DPWDATSSYS RLSDPHKKNQ
AYDLQLPWLK PFTDYSLKGR PGGIADEFGR TLAKPVDLQL STDHRPPDYV LYKSMPVLEK
YLDTDAPALT TNINQIDLSY ETLTTEGKTA RQTAAVPVKK PLDSTAAVPL GIRRMLSGKP
GVATGRLSTQ PPVGGKETGD KWFFAQVTPY SVHVKLGHHN TLVWVTDLKT GKPVMGVDVQ
IYKDAYKVLT SSPRSLSRGK TKPDGTVELA GTATLDPDLK LSHSYKFDSP HLFVRCEKGE
DLAVMPLVHD FRVDAEGANH DYIPSYQRVR HGHLRAWGAT AQGIYKAGDT VQYKIYVRDQ
DSHRFAPPPK DQYSLKVVDP VDKVVHEREG IVLSEFGAFD GEFAVPKTGA VGYYRFVLKP
AFIEEDLEPL KVLVSDFTPA PFKVETELSG NLFGSGDAVK VSTRARMHAG GPYADADTRI
MAYVQSRPFE PQNQAARGYQ FDVQEGSEHH APSTEMVHQA QKKLDNDGNL ETEFKLAELA
ILYGRLNVES AVRDDRGKFV ANKAAATYYG RDRYVGMLLD GWVLQEGKPA KAGFLVVDQN
GSPVTGVPLH IKVEWEQTKG SRVKGAGNAY RTEYVTEWVE TESRDAVSAS APGQFEFTPK
RSGAYRITAA INDTRGRPHE TSLRRWATGK GYVLWESVPG NLLNVSPEKT EVRVGETARF
LVQNPFPGAQ ALITVERFGV LQSWVKTLAR STEVVEIPVL PDYLPGFYLS VLVTSPRVDK
PLSPEGDDLG KPTFRMGYAK IDVKDQYKEI TVKAKPEKEE YKPGDTVTVE LEARPRNLRQ
GEAAPPVELA VTVLDEAVFD LLIQGRKAYD PYLGFFQEVD DLDLANYSLL MHLVGREKLE
KKGASPGGGG GFDLGLRSVF KFVSYWNPSV PVDAEGKARI RFKVPDNLTG WRVLAMAVTP
DDRMGLGDTT FRVNQSTEIR PALPNQVIAG DGFEAGFTVM NRTDAPRVIE VSIEASGPVE
LKDGAPPKIV LQITAEPFRR QSVRLPLKTT GPGEIVFSAR AGDERDRDGL KQTLKVLPRQ
SRETVALYGS TEEGEVSRNV AFPENLRPEM SRLAVTLSPT ALAGLDGAFA YMKQYPFSCW
EQKLAVGVAA ALYPQLKPHL GESFSWDESE ALVGKTIALA VEYQAPNGGM TFYTPKNEYV
SPYLSAFTAL AFNWLRESGH EIPGAVEKKL HEYLQGLLRR NETPEFYSQA MASTVRAAAL
AVLAESGKLK AEDLDRYRDR VKEMSLFGKA MYLRALLRVP TARTPQREVL EAILAHADET
GGKLLFTETL DSGFRCFLGS SMRDNSAVLS TFIAYQAANP AASGLGDMSA RLMRAIVEQR
KGRNHWQSTQ DNLFAMKALA DFARVYEKAD PDMSVSAFLD ATPLGTAEFR KSTDPPALLV
RPLEAADPGR KAVVKLERKG TGRLYYTTAL SYTPREPSRE SVNAGIEVGR EYSVERNGSW
VLLKSPMEIK TGELVRIDLF VSVPAERFYV VVEDPLPGGL EPVDRQLATA STVDAAKGEA
AVPEGSFLRR YSDWLEYGGS RWSFYHRELR HEAARFYSER LPAGRYHLSY TAQAIAPGEF
VALPVRAEEM YDPDVFGKGL QETLIVRPGE KTD
|
|---|
| |