Gene Sfum_2226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2226 
Symbol 
ID4459492 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2728384 
End bp2730663 
Gene Length2280 bp 
Protein Length759 aa 
Translation table11 
GC content67% 
IMG OID639702992 
Productglycosyl transferase family protein 
Protein accessionYP_846343 
Protein GI116749656 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC 
TIGRFAM ID[TIGR02073] penicillin-binding protein 1C 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTTAA AAGGGAGCGA AGTTTCCTCG AGGCGTTCCC GCCTTCTGGC GGGGTTGTTG 
GCCTGCCTTG CGCTCGGGGC GGCGGGGACG CTTCTGCTCG CCTGGAAAAC CGTTCGCGAT
TTGCGTCCGC CGCCCGAAAG TCTCTCCCTC GGGGACGCCC CCGTGCGCAA AATGAAGATT
CTCGACCGCA GCGGCATCCC GCTCTCGGTC ACTTACATCA ACCACTGGAA TCTTCACGAT
GCCCTGCCCC TTCGGGACGT CCCGGAGCTT TTGAGGCAGG CGTTCATTAC CTCTGAGGAC
AAGCGCTTCT TTGAGCATCA CGGGGTGGAC TGGCAGGCCC GGGGCCATGC CCTGTGGCAG
AACGTGAAGG CGCTGAAAGC GGTGCGCGGC GCGAGCACGA TCACCGAGCA AACGGTGCGG
ATGCTTCATC CGCGCCCTCG AACCCTCTGG TCCAGGTGGC TCGAAGGGAT CGAGGCGTAC
CGGCTGGAAC GACGTTTTTC CAAAGCCGAA ATCCTCGAAT TCTACCTCAA CCAGGTTCCA
TACGCGCACC GAAGACGAGG GGTGGTCCAG GCCGCAAGGC TCTACTTCGA CCGCGATCCG
GATACTTTGA GCGTGCGGGA AATGCTGGCC CTCGCCGTCG TGGTGCGCGC TCCTTCGAGC
TTTGATCTGC GCCGGGGGGG CCGGGGCGTG GATGGGGCCG TCAGGAGGCT GGCGGCGAAC
ATGAAACGGC GCGGGACGCT CACCGAAGAC CAGTACCGGA GCGCCGTGGA AGACCGCATC
GAGCTGCGCG AAGCACGGCC TCCGGTGGAC GCCACGCACT TCGTGCAGCA TCTCCATCGC
GCCGGGGCGG AAGGAGCCGC GTTCGGCAGC ACCCTCGTCA CCACCCTGGA TGCGGCCCTC
CAGGAGCGAG TTCGACACAT ACTCGGCAGT CGCCTGAGGG ATCTGCGCTC GAGCGCCATC
GGCAACGGTG CCGTGCTGGT GGTGGATCAT CGGTCCGATG AAGTGCTGGC ATGGGTGAAC
GGAGGCGCAA TGGCCGAGGA CGCCCCCGGT GCGTGGATCG ACGGCGTCAC CACGCCAAGG
CAGCCGGGTT CCACCCTGAA ACCCTTCCTC TATGCCCTGG CGCTCGAAAT GGGCTGGACC
CCCGCCACCC TCATTGACGA CTCGCCCGTG GCGCAGGCCG TCGGATCGGG GCTCCACAAC
TTCCACAACT ACAGCCGAAC CTACTACGGG CCACTGCGGT TGCGGGAGGC GCTCGCCAAT
TCGTTGAACG TTCCCGCCAT TCGCGCCATC CAGTTCACCG GGACGGAGCG GTTCCTCGGC
CGGCTGCGCC TGCTCGGGTT TCAATCCCTG GCGCAACCGG CCGACTTTTA CGGGCAGGGC
CTGGCCCTGG GCGACGGGGA GGTGAGCCTG TTCGAGCTGG TTCGCGCCTA CGCGGTTCTG
GCTCGGCAGG GCGAGTACCG GCCACTGCGG ACGACCCGGG CTCCCGTGAC TGTGTCCGAG
CCGCCGCGCC GCGTTTTCGC CGCGACCACG GCAGCCCTGA TTGGAGACAT CCTGTCCGAT
CCCCAGGCCC GGCGGCTGGA ATTCGGCGAC GGGAACCTGC TGCGGCTGCC CGTTCAGACG
GCCGTGAAGA CGGGGACGTC CACCGACCAC AGGGACAGTT GGATCGTGGG GTTTTCAAGC
CGATACACCG TCGGAGTCTG GATGGGAAAT CTGGACCGCG GTCCGACCAA AGGCGTCACC
GGCCTGGCGG GTCCCGGGCT GGTTTTGAGA GCGGTCTTCG CGGAGCTGAA TCGATACGGC
GACGCGGCTC CCCTTCCTCC GTGTCCGGGC CTGGCGATGG CGACCATATG CGCCGAGAGC
GGGCTTCCGG CCGGACCGAA CTGCCCCGGG TTGCAGGAGT GGTTCGAACC CGGGACGGTC
CCCACCGGGG TGTGTTCCAT CCACGAACGG CCGGGCCGAC GCGATTCCGG CGGGGTCGTC
GTCGAGGCGA ACCGCTCCCG GGAGCTGCGC CTGCAGCAGC CGACGCCCGG GCTGCGGCTC
GCCATGGATC CTCGTATTCC CGACGAGCTC GAAGCTTTTC CGTTCAAGGT TCCCGAGCGG
CCGCCGCCCA GCCGCATCGA ATGGCTGGTC GACGGAGAGG TGATCGGCGC AACGGGGCCC
GGCGTGTGCC AATTCGCGTG GCCGCTCTCC AGGGGCGCTC ATCTGGCGCG CGCCCGGGTG
TGGCGCGCCG ATGCGCCCGG AGCCGAGGAA ACGCCTGAGG TGCGGTTCAC CGTGGAGTGA
 
Protein sequence
MTLKGSEVSS RRSRLLAGLL ACLALGAAGT LLLAWKTVRD LRPPPESLSL GDAPVRKMKI 
LDRSGIPLSV TYINHWNLHD ALPLRDVPEL LRQAFITSED KRFFEHHGVD WQARGHALWQ
NVKALKAVRG ASTITEQTVR MLHPRPRTLW SRWLEGIEAY RLERRFSKAE ILEFYLNQVP
YAHRRRGVVQ AARLYFDRDP DTLSVREMLA LAVVVRAPSS FDLRRGGRGV DGAVRRLAAN
MKRRGTLTED QYRSAVEDRI ELREARPPVD ATHFVQHLHR AGAEGAAFGS TLVTTLDAAL
QERVRHILGS RLRDLRSSAI GNGAVLVVDH RSDEVLAWVN GGAMAEDAPG AWIDGVTTPR
QPGSTLKPFL YALALEMGWT PATLIDDSPV AQAVGSGLHN FHNYSRTYYG PLRLREALAN
SLNVPAIRAI QFTGTERFLG RLRLLGFQSL AQPADFYGQG LALGDGEVSL FELVRAYAVL
ARQGEYRPLR TTRAPVTVSE PPRRVFAATT AALIGDILSD PQARRLEFGD GNLLRLPVQT
AVKTGTSTDH RDSWIVGFSS RYTVGVWMGN LDRGPTKGVT GLAGPGLVLR AVFAELNRYG
DAAPLPPCPG LAMATICAES GLPAGPNCPG LQEWFEPGTV PTGVCSIHER PGRRDSGGVV
VEANRSRELR LQQPTPGLRL AMDPRIPDEL EAFPFKVPER PPPSRIEWLV DGEVIGATGP
GVCQFAWPLS RGAHLARARV WRADAPGAEE TPEVRFTVE