| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2214 |
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| Symbol | |
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| ID | 4459480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 2715262 |
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| End bp | 2717040 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639702980 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_846331 |
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| Protein GI | 116749644 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.345711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAAGT CTGACAAGAA AGACATGGAA CAGGGAGCCA ACCTCCTGGA CACTGTCCTT
GAATTGGTCC AGGCCGGGAT CGTGGTGATC GACAGCCAGG CCAGGATTGT CCGGATCAAT
GCGGTCGCCG AAATCCTCTT CGGCCTCAGT GGAGAGGAGA TCGTCGGGGA GCCGTTGTCT
GCAACCCTGG TCGATTCCGC TCTTGCCGAC GTGCTGAAAA CCGGCCAACC CTTGGGCCCC
GTGTCCGAAC ATCGCAATGG GCGGCACTTG CTCGCCAGAC ATCACCCGGT GATGGACGAG
GGCGGGAAAG TGAGCGGGGC CCTGGGGGTC TACGTCGACA TCACCAGGGA CGGCCGGGTA
AAGCAGCAGC TGATGGAGGC GCGGCAAAAG GAGAAGGAGC TCGAAGCGCT GCTCGACCAC
TCCCACGATG GGGTCTGGAT TATGGACGGC AAGGGCGTCA CCCTTCGAGT GAGCAAATCG
TGGGAGGATT TTTCCGGGAT TAAGCGGGAG GAAGTCATCG GCCGCACGGT GTACGATCTT
GTGGCCGACG GCATCTATAC CGACTCCGCC GCCATCCACG TCATCGAAAA AAGAGAACCG
GTCACCATCA TGTATACGAC CAGGACCATG AAAGTCGCCC TGGTCACGGC CAACCCCGTT
TTTGGCGCCG ATGGAAGGAT CTGGCGCATA ATATCCAATG TCCGCGACAT CACCGAGCTG
AACCGGTACA GGACGGAGCT GGAAAAAAGC GAGGCCAGCA GCCGCCGTTT CAGGGACGAA
CTCAAACTCC TGCGCCAGCA ACAATCCGAC GACAACGGCA TTATCGCCCG CAGCCGGGCG
ATGAAACAGG TACTGGAGGC GGCGGCGCAA ACCGCCGCTT CGGAAGCGAC GATCCTGATC
TCGGGTGAAA CCGGGGTCGG CAAAGACGTC CTGGTCCGTT ACATCCACGG CATGAGCGGC
GGTAACGGCA CGTTGATCAG GGTGAACTGC GGGGCGATCC CGGAAGCCCT GATGGAATCG
GAGCTTTTCG GGTACGAGGA GGGGTCGTTC ACCGGGGCGC GCGCAAAAGG CAAACCCGGG
CTGTTTGAGC TTGCCCAAGG GGGCACGCTG TTCCTGGACG AGGTGGGGGA GCTGCCGGTC
GCGATGCAGG CCAAGCTCCT GCACGTTCTT CAGGATCGCA CCATCATGCG GGTTGGAGGG
GTGCTGCCCA TCACTCTGAA CGTGAGAGTC ATCGCCGCAA CCAACCGGGA CTTGAAAGCC
ATGGCCGAAG AAGGACAATT TCGCCAGGAC CTCTACTATC GGCTGAATGT CATTCCTTTG
CACATTCCGC CTTTGCGCGA CCGACCCGAT GATATTATCC CGCTTGTCAT GCATTTCCTG
GAAAAGCATA ACAAGAGACA TAAGACCTGC AAGACCGTCG GCTCTCGTGC CCTGGAACTG
CTCAAGGAAT ATGTCTGGCC CGGCAACATA CGCGAGCTGG AGAATACCAT CGAGCGGCTG
GTCCTGACAT GCCCGAAGGA TATGATCGAT GTTCAGAACC TGCATGCACT CATCGACAAA
GAAGACGTTC CGCCTCTGAA GGAACTGTGT TTTTCCCTGA ACGCTTCCCT CAAGGACGCC
AGGGAAGAAG TGGAGAAATC CATGATCGAC TGGGCGCTGA AGCGCTTCGG CAGCACTCGC
AAAGCCGCCG CGGCCCTGGG GGTGACCCAG CCGACGGTCG TAAGGCTCGC CCGCAAGTTT
GCGCTCAACA AATCGGGCAT TCGATTGCCG GACGAATAG
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| Protein sequence | MLKSDKKDME QGANLLDTVL ELVQAGIVVI DSQARIVRIN AVAEILFGLS GEEIVGEPLS
ATLVDSALAD VLKTGQPLGP VSEHRNGRHL LARHHPVMDE GGKVSGALGV YVDITRDGRV
KQQLMEARQK EKELEALLDH SHDGVWIMDG KGVTLRVSKS WEDFSGIKRE EVIGRTVYDL
VADGIYTDSA AIHVIEKREP VTIMYTTRTM KVALVTANPV FGADGRIWRI ISNVRDITEL
NRYRTELEKS EASSRRFRDE LKLLRQQQSD DNGIIARSRA MKQVLEAAAQ TAASEATILI
SGETGVGKDV LVRYIHGMSG GNGTLIRVNC GAIPEALMES ELFGYEEGSF TGARAKGKPG
LFELAQGGTL FLDEVGELPV AMQAKLLHVL QDRTIMRVGG VLPITLNVRV IAATNRDLKA
MAEEGQFRQD LYYRLNVIPL HIPPLRDRPD DIIPLVMHFL EKHNKRHKTC KTVGSRALEL
LKEYVWPGNI RELENTIERL VLTCPKDMID VQNLHALIDK EDVPPLKELC FSLNASLKDA
REEVEKSMID WALKRFGSTR KAAAALGVTQ PTVVRLARKF ALNKSGIRLP DE
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