Gene Sfum_2112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2112 
Symbol 
ID4459571 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2583487 
End bp2584566 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content62% 
IMG OID639702879 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_846230 
Protein GI116749543 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.319064 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000802452 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
TTGAATCCTC TACAAAGACA AACCACTCGA CAGCTATCGA TCGGCGGGGT TCTCATCGGG 
GGAGGCGCCC CGGTCGTGGT CCAGTCCATG ACCAACACGG ATACCAGGGA CTGGCGTTCC
ACCGTGGCGC AGATCGAGAG GCTCCATGAG GCGGGATGCG AGCTCGTGCG CGTGGCCGTG
CCGGATGATC AGGCCGTTGA ACAGCTTTCC CGGATCAAGA AGGCCATTGG GATCCCGCTC
ATTGCGGACA TCCATTTCGA TCACCGCCTC GCACTGGGCG CAATCAAGGC CGGAGTGGAC
GCGCTGCGGC TGAATCCCGG CAACATCGGC GGCCCCGACA AGGTGCGCAA GGTCGCGGCG
GCGGCGCGGG AAAGGGGGAT CCCCATCCGT ATCGGCGTCA ACAGCGGCTC GCTCGAAAAG
GAATTGCTCG CCCGCCACGG CCATCCGACT CCGGAGGCAA TGGTGGAGAG CGCGCTCAAA
CACGTTCGAC TCCTGGAAGA TCACGATTTC GATCTCATCA AGATTTCCCT GAAATCGTCG
GACGTGCTCA ACACGGTTGC CTCATACCGC CTGCTGTCGT CCCGGACGCG CTACCCGCTG
CACCTTGGCG TAACCGAAGC GGGGACCCTG GTGGACGGAG CCGTCAAGTC GGCCCTGGGG
ATCGGCATCC TGCTGTTCGA CGGGATTGGG GACACGCTGA GGGTTTCGCT CACGCGGGAT
CCGGAGGACG AAATACCGGT GGCCTACGGT ATTCTCCGCT CACTGCGGCT GCGCGACCGC
GGAGTGGAGC TCGTGAGCTG TCCGACCTGC GGCAGGACGG AGATCGATCT CATCCCGATG
GTGGAAGAGA TCGAAAGGCT GCTGAGAAAA GTGCGCACCC CGCTGAAAGT GGCCGTTATG
GGATGCGTGG TGAACGGGCC CGGAGAAGCG CGGGAAGCGG ACGTGGGAAT TGCCGGAGGG
CGCGGAAAGG GAATTTTGTT CAAGAAAGGG GAGCGGATTG AAACGGTTCC AGAGGCGGAG
CTGATGAAGA GGCTGCTGGT TGAAATCGAG AAAATGACCG GCGAAAGGAT CATGGGGTGA
 
Protein sequence
MNPLQRQTTR QLSIGGVLIG GGAPVVVQSM TNTDTRDWRS TVAQIERLHE AGCELVRVAV 
PDDQAVEQLS RIKKAIGIPL IADIHFDHRL ALGAIKAGVD ALRLNPGNIG GPDKVRKVAA
AARERGIPIR IGVNSGSLEK ELLARHGHPT PEAMVESALK HVRLLEDHDF DLIKISLKSS
DVLNTVASYR LLSSRTRYPL HLGVTEAGTL VDGAVKSALG IGILLFDGIG DTLRVSLTRD
PEDEIPVAYG ILRSLRLRDR GVELVSCPTC GRTEIDLIPM VEEIERLLRK VRTPLKVAVM
GCVVNGPGEA READVGIAGG RGKGILFKKG ERIETVPEAE LMKRLLVEIE KMTGERIMG