Gene Sfum_2078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2078 
Symbol 
ID4459607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2540706 
End bp2541545 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content63% 
IMG OID639702845 
Productbeta-lactamase domain-containing protein 
Protein accessionYP_846196 
Protein GI116749509 
COG category[R] General function prediction only 
COG ID[COG1237] Metal-dependent hydrolases of the beta-lactamase superfamily II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATGCA GAATCACCGT CTTGTGCGAA AACACGGTGT CGGCCCCCGG ACTGCTGGGC 
GAGCACGGTT TTGCCGCCTT TGTCGAAATT CCGGGCGACA CCGTTCTGTT CGACACCGGG
CAAGGTTACT CCCTGGTCCA CAACGCTCTT AGGCTCAGGA AAAACCTGGC CGATGCTTCG
CGGCTCGTGC TGAGCCACGG GCACTACGAC CATACCGGAG GCATCCTCGC GCTCCTCGGC
ATGAGAGACG GCTGCGACAT CGTCGCCCAC CCGGATGTTT TCAGCGAGCG GTTCTGGGTC
ATGGAAACCG ACGGTCGTGA AAAGGCGGTC TCCATCGGCA TGCCCTGGCC GGAGACCTAT
CTTTCCACGC GCGGCGCCCG GTTCCGCCTC GAGCGGGCCT TCACCGAAAT CGCGCCCAAC
GTCTTCATCA CCGGGGAAGT CCCGCGCCGG ACACTGTTCG AGCTCGGTTC CCCGAAATTC
ACCGTGCGCG CGCAAAAAGG CTTCGCCATG GATCCTTTGC TGGATGACCT TTCGCTGGTG
CTGAAAACCT CGAAGGGCCT CGTGATCGTC CTGGGGTGCG CGCACGCGGG GGTGGTCAAC
ATCATGCGGC ACGCAGTGGA GAAGACCGGG GTATCGCGCA TTCACGCAAT CCTTGGCGGA
ACCCACCTCG GGCTTTCCCC CGCCCCCCAG TTCGACCCGA CCATTGAAGC GATCAAGAGC
GCCGACATCG GTCTTCTGGC GGTCAGCCAC TGCACGGGGC AGCAGCCCGT GGCGCGCCTC
GCCTCGGAAT TCGGCGAGCG GTTCGCCTTC GGCAACGTGG GGTTCGTCAT CGAGGTGTGA
 
Protein sequence
MECRITVLCE NTVSAPGLLG EHGFAAFVEI PGDTVLFDTG QGYSLVHNAL RLRKNLADAS 
RLVLSHGHYD HTGGILALLG MRDGCDIVAH PDVFSERFWV METDGREKAV SIGMPWPETY
LSTRGARFRL ERAFTEIAPN VFITGEVPRR TLFELGSPKF TVRAQKGFAM DPLLDDLSLV
LKTSKGLVIV LGCAHAGVVN IMRHAVEKTG VSRIHAILGG THLGLSPAPQ FDPTIEAIKS
ADIGLLAVSH CTGQQPVARL ASEFGERFAF GNVGFVIEV