Gene Sfum_1996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1996 
Symbol 
ID4459697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2443969 
End bp2445537 
Gene Length1569 bp 
Protein Length522 aa 
Translation table11 
GC content63% 
IMG OID639702762 
ProductAMMECR1 domain-containing protein 
Protein accessionYP_846114 
Protein GI116749427 
COG category[R] General function prediction only
[S] Function unknown 
COG ID[COG1355] Predicted dioxygenase
[COG2078] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00296] uncharacterized protein, PH0010 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTCC ACAATAAAGC GTACAGACGG TTTGTCTTCC TGCTCCTGGG GGCTGTGCTG 
GTCCTTTTCC GGTGCCCGGG CATTCAAGGC GACGGCAGCG CCGCGGCGGG GGCCCCGGAA
CAGGTCAGAA AACCGGCGAT TGCGGGCACT TGGTATCCCG CTTCTCCGGT GGAGCTGAGA
AAACAGATCG AGGGGTTTCT GAATCGGGTT CCGGAGCCCA AGCCTCGGGG GCAATTGGTT
GCGCTGATCT CTCCGCACGC CGGCACCATC TATTCCGGAC AGGTTGCGGC CTACGGGTAC
AAGCTCCTCG AGAAACAAAA ATTCGCATCC GTCATTGTCA TATCCCCGAG TCATCGTGCC
CGTTTCGAAG GCGTGGCAAC CTACGAGCTG GGAGGTTTCC AGACGCCTCT GGGCATTGTT
CCCCTCGACC GCGATCTGAT TGAAGCCCTG AGGCGTCGCG ACAAGCGCAT CGCCCATCGC
CCGGAGGTCC ACTCGGAGGA ACATGCGCTG GAGATCCAGC TTCCCTTCCT GCAGACGGTC
CTGGAAGAAT TCAAGCTGGT GCCGCTGATC ATGGGGGAGC AGGACTTCGC CACGTGCAAA
CGGCTTGCCG AGGCGATCGC CGACACGGTC AGGGAGAAAC GGGTGTTGGT GATCGCCAGT
TCCGATCTTT CGCATTTCCA TCCGTACGAA CGGGCCAAGG CCCTCGACAA GGTGGCGGCG
GACCGGGTGG GTGCCCTCGA CCCGCAGGGG CTCAGCTACA GCCTGGCCGG AGGGGAGTGC
GAAGCGTGCG GTGGCGGGCC CATGGTCACG GCGATGCTGG CCGCAATGCG GCTGGGGGCG
AATTCGGCCG AGGTGCTGAA GGTCGCGAAC TCGGGTGACG TCACGGGAAA CAAGAACGAC
GCACGGGGCG TGGTCGGGTA TATGTCGGCG GCCCTCTGGC GGGGCCCGTC GGGGAAGGCC
GGGGCGGCCG GAACATTCGA TTTGATTGCG AAGGCCGAAG CCGCCGGGCC TCCGGAATCA
ACCGCCGCAG GCTCCAACCT GACCGCCGAG GAGAAGGAGG CGTTGCACCG CATTGCCAAA
CAGGCGATTG AGGCCAAGCT CCGAGGCGGC CCGGCGCCGT CCGTGGACAA GGCTTCGGGA
AATCTGAAGG AGCCTCGAGG CGCTTTTGTG ACCCTGCACA AAAGAGGAGA GCTCAGGGGC
TGTATCGGGC ACATCATTAC CAGCCGGCCC CTGATCGAGA CGGTGAGCGA GGTGGCGGTG
GCGGCAGCCG TGCAGGACCC GCGTTTCAGG CCGGTGACCG CCGAGGAGTT CAAGGATTTG
GATATTGAAA TCTCGGTTCT GACCCCGTTG CGGAAGATCA CCGGCGTGGA GGAGGTCGAG
GTGGGAAAGC ACGGCCTGGT GATTCGCCGA AACGGTGCAT CCGGGCTCCT GCTTCCCCAG
GTCGCGACAC AATACGGGTG GGACCGCAGG GCGTTTCTGG AAAACACGTG CAGGAAGGCG
GGCCTGCCGT CGAACGCCTG GCAGGATGAG AGGACGGAGA TCTATGTTTT TTCCGCCGAA
GTGTTCTGA
 
Protein sequence
MNFHNKAYRR FVFLLLGAVL VLFRCPGIQG DGSAAAGAPE QVRKPAIAGT WYPASPVELR 
KQIEGFLNRV PEPKPRGQLV ALISPHAGTI YSGQVAAYGY KLLEKQKFAS VIVISPSHRA
RFEGVATYEL GGFQTPLGIV PLDRDLIEAL RRRDKRIAHR PEVHSEEHAL EIQLPFLQTV
LEEFKLVPLI MGEQDFATCK RLAEAIADTV REKRVLVIAS SDLSHFHPYE RAKALDKVAA
DRVGALDPQG LSYSLAGGEC EACGGGPMVT AMLAAMRLGA NSAEVLKVAN SGDVTGNKND
ARGVVGYMSA ALWRGPSGKA GAAGTFDLIA KAEAAGPPES TAAGSNLTAE EKEALHRIAK
QAIEAKLRGG PAPSVDKASG NLKEPRGAFV TLHKRGELRG CIGHIITSRP LIETVSEVAV
AAAVQDPRFR PVTAEEFKDL DIEISVLTPL RKITGVEEVE VGKHGLVIRR NGASGLLLPQ
VATQYGWDRR AFLENTCRKA GLPSNAWQDE RTEIYVFSAE VF