| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1946 |
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| Symbol | |
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| ID | 4459751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 2377161 |
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| End bp | 2381462 |
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| Gene Length | 4302 bp |
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| Protein Length | 1433 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639702714 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_846066 |
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| Protein GI | 116749379 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.465933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.94223 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAATA AGATATTTCG CAGATCGGCA CGGTTTTTCC TGTGTGTGTT TGTACTCTCA
TGCCCTCTCG TCTGGGCCGG TTTGCCCGTC GCGCCCGGCC TCAATTCTCC GGGAAACGAC
ACTTGGGTCC CGTTAACGGA AACCGCTCGA ATCGAAACCG CCTCGGCGGC GCGCTGTCTA
TTGGCCGCCC ACGCCGGCGG CAAGGGCGCA ACCGGGCTTT CCCCGAGCCC GGGGCACGGC
GAAGCGCTGA GCGCCAAGCC GGCCCTGGAA GACCTCGACT ACGGGGTGGA CACCGAAGCG
TTCTTTCCCG GCGGAGACGT GCTGGGGGGG ACGGTGAGCA TCCTCACCGG AAACGCCGTG
GAGACGGCGG CCGATCTTGC CTACCCCTCC GCCCACCGCT TGGGGCTGAC CTTCGGGAGG
ACTTACAACA GCCGGGCCGA AACCTCGGGG ATCCTCGGCA CCGGGTGGAC CCACACCTAC
GGGGCGAGCC TGACGCCTCC CGTCTCCCCC GACCCCTATC TCAAGGTCGT CGACTCCACG
GGCCGTGCCA GGTATTTCAC CGAGGAGAGC GCCGGGGTCT ACAGGGGCGC CTTCAACGAT
CACACCAAAG TGCTCGTTCT CGTGAACGGC AATTACGCCT GGTACCCGCT GGACGGCACG
ATATTCATTT TCTCTCCCAC GGGTTTGCTG CTCCACATCC AGGACATCGC GGGAAACCGG
CTGAGCCTCA CCCACGACGC CCAGAACCGC CCGTCCACGG TGAGCGATCC ATCCACGGGC
CGAGCACTCA CCTTCAGCTA CAACGGTTCC GGGCTGCTCG AAACCATCAC CGGGCCGCTT
CCCAACACGA CCTCGACGGG GACCGTCGCG ACCTTCACCT ACGATGCAAA TTCCAACCTC
ACTTCCGTGC TCTATGCGGA CAACTCGGGG TTCACTTACG AGTATGCCGA CGCCAACGAC
GTGCACAACC TGACCCTCAC GCAAAACAAG GCCAACCATA CCCTGTTCGA ATGGACCTAC
GACGCCCAGG ACCGGTGCGC CTGGCATCGG AGCCGGCGCG CCAGGGGATC GTTTTCCGTG
AGTTACGTGA GCGACACCCA GGTGGACGTG ACGGATCCGT ACAATTGGGT GCGCTCCTAC
ACCGTCGCAA CGGTTGCGGG GAGAAAGCGC GTGACGGCGG TGGTGAATCC GGCCTACCCC
GGCGACCCTG ATAAGGCCGC CAACGCCCCG TATGCGGCAA GCAACGCCCT TGCCTGGACC
TATGATGCGA GCACGGGAAA CCTCACGGAC GCGACCTTCC CCAGGGGAGT CGTCAACCAG
TTTCGGAACT TCATCGTGCG GGGCTATCCT CAGACGGTGA TTCTGGCGGC GGGGAGCGCG
CAGCCCCGCA CCATCGCCTA CACCTGGCAT CCGAGCATGA ACGTGGTGCT CACCCGCACC
GAAGCCAGTG TGCTGGGAGC GGGCAACAAG GAGACGATCT TCGATTACGA CGATCCGGCG
GCCGCGGGTG ACGACCCGGC CGTCTACAAC GAGAGCCCCA CGAAGTTGCT CTACCGCAAG
ATCGAGAAAG GCTACCGCAA GACGGTGGCG GGAACCGTGG CGTCCTACGA ATACGTTACG
GCCCTGACCT ACAACGCCGG GGGACAGGTG CTCACCATCG ACGGGCCGCG TTCGGGAACC
GGCGACACGA CGACCTTTGC CTACGATGCG ACGACGAACG ATCTCTTGTC CGTTACCCGG
CCGCTCGTTG GGGCCACGGT GTTTTCCAAC TTCGACGCCG CGGGGAACCC GCGAAAGCTG
ACCGACGTCA ACGCCCAGGA ACAAACCTTC GTCTACGACA GCCGGGGAAG GATAAAAGAA
ATCCACAACA CGGCCGACTC GAGCGTGCGC ACCGTGACGT ACAACGTCGC GGGGCTTCCC
GCGACGCGAA CGGACGAGGA CGGGGTCAAC GAGTCCCACA CCTACGACAA CACCTACGGG
CAGCCCCGGC GGGTGACCGA TCACGAGGGT AATTATGTAA AGACCATTTT CAACGCGGCG
GGCAATCTCA CGAGCGTGCA GCACCTCACG GCCGCCGATG AAATCACCAG GGAGAGGACC
TGGAGCTATT CGGGTTCGGA CTATCCGGGG CTTCTTTTCA AGGAATACGA AGCCGACGGC
GTCACCCACA CCCGCACCCA GTACGACGCC TCGGGCAACG TGCGATCCGT TGTCGATCCC
AACGGGAACC AGACCGACTA CGCTTACGAC GCGTTCAACC GGGTGATTTC CATCACCCGG
CCCGGGAATG CCGTGACCCA TTTCGAATAT GACTCACAGG GGAACCTCGC CAAGGTGGTC
GATCCGGAAG GCGATCCGGC CAATCCCGCC CTTGGCCACA CCACCACCAC CACCTACGAC
GACATGGGGA ACCTCATCGG GGTCGGTTCC CCGGATTCCG GGACCACGAC TTACGGGTAC
CGGCCGGAGG GGACCATCTG GTGGAGGATA GACGCGAGAA ACATCCAAAC GACCTATTCG
AACGACGCCC TCTACCGGAT CAACCAGGCG AGCTACCCGG CCGTGGGGGA TCTTGCCGCC
TACACCGTGA CGTACTCGCA CGACCAGCGC GCAAACGGCA AGGGGCATCT GACCACCGTC
ACGGATCCTT CCGGCACCAC CCTTTTAAAC TACGACGCCC GGGGAAGGCT CAAGGAGAAG
AAATCCACCG TTTCGGGGTT TCAATTCACC CTCTCGCGCA CGTTTTCCCC CGCGGGCCGA
GTGAACCAGC TGACCTATCC GAGCGGCAGG ACGGTGACTT ACAGCCGCGC GGGTTGCGGA
TGCAAGCTCA CCGGGGTGAG CACGACCTAC GGGGCCGAAT CGGCCACGAC CATCCTCGAG
AACCTCAGCT ACCAGCCCTT CGGCCAGGCC ACCGGCATGG GCTGGGGAAA CGCCGGGAGC
GTGGTGAGCG AATACGATCT CAACGGGCGT CTCACCACGG CAAATCGCGG CGCTCCCATG
CAGCGCGACT TCACCTATTA CCCCAACGGG CAGCTTCACA CCGTCGCGGG CACGGCCTCC
ACGCCGTGGG TGAACCGCGT CTACGCCTAC GATACCCTGG ACCGGCTGAG CCTTGCCGAG
CGCCCGCAGC TGACCAAAGC CTACGACTTC GACTCCGCGG GAAACCGGCT GCACACCATC
GTTGACGCCT CGGTGAGCGA AACTTACGCC TACGCTGCCG GAACGAACCG CCTGAGCGCC
GTCGCGGCCG CGCAGGGCAA AACCTTCGAC TATGACGCCA ACGGGAACAC GATCCTCATC
GCCTCGGGAA CGAACCGGGT TTTCACCTAC AACCAGGAAA ACCGTTTGAT CGGCGTCGCC
GAAGACGGGA ACCCGTTAGG CACCTACGTC TACAACGGGT TCGGCCAGAG GGCGGCAAAG
ACCGCGGGAG GGGTCGCGAC GCTCTATATC TACGATTTTA GCGGGAACCT CGTCTGCGAG
GCCGAGGGAA CCGGCGGCGG CATTCAAAAG GAGTACATCC ACCACGGGAG GAGCCGCCTT
GCGATGGCCG ATCCCGGCGC CGGGGCCGTT TGTTCGGGGA ACACCAAGGT GTGCGTGTAC
TTTACCCACA ACGACCTCCT GGGAACGCCC GAGTTCATGA CCGATTCCAC CAACACCGCG
GTCTGGGAAG CCGCCTACGA CGCCTTCGGC GAAGCGACGA TCCATCCCGC TTCCACCGTC
GTCAACAACT TCCGTTTCCC GGGCCAGTAC TACGATGCCG AGACGGGCTT GCATTACAAT
TGGCACCGGT ACTATGATCC CAAAACCGGA AGGTACATGA CCCCTGATCC CATCGGGCTT
GCAGGGGGGA TCAATCCTTA CACTTATGCG GAAAACGACC CGATCAATTT CATTGATCTC
TACGGACTCT GGCGGTTTCC CGACTATGTA TCAATTAACT TTAATATAGC AATCCCAACC
CCGTGGACAG CCACATTGCT TGGAGGCACC GCACAGGTAG CTTTGGATAG ATATGGTAAT
TTTTACGCGG GGCCCGGTGG AACTGTTGGA AAAGCGGCAA CAGTTTTTTC TCTTAGCGCG
ACAGTAGGAT GGTTGGATAC AAGCGAAAAG CCCTGCGAAA AGACATTGGA TAATTTCTTG
TCTGGTCATA GCTTCAACGC TGGTGCGGGA TTCTGGGGGG GCGGCGGGGA AACATGGACC
CCTGGTGTCG GCACCGGCAC GGAGGTCGGC TTTGTATCCC CTCAAGCTGG GGCAAGTTAC
CATTACTCTT GGAAAGTAAC AAAATTCGGA TTCGGGTGGT AA
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| Protein sequence | MANKIFRRSA RFFLCVFVLS CPLVWAGLPV APGLNSPGND TWVPLTETAR IETASAARCL
LAAHAGGKGA TGLSPSPGHG EALSAKPALE DLDYGVDTEA FFPGGDVLGG TVSILTGNAV
ETAADLAYPS AHRLGLTFGR TYNSRAETSG ILGTGWTHTY GASLTPPVSP DPYLKVVDST
GRARYFTEES AGVYRGAFND HTKVLVLVNG NYAWYPLDGT IFIFSPTGLL LHIQDIAGNR
LSLTHDAQNR PSTVSDPSTG RALTFSYNGS GLLETITGPL PNTTSTGTVA TFTYDANSNL
TSVLYADNSG FTYEYADAND VHNLTLTQNK ANHTLFEWTY DAQDRCAWHR SRRARGSFSV
SYVSDTQVDV TDPYNWVRSY TVATVAGRKR VTAVVNPAYP GDPDKAANAP YAASNALAWT
YDASTGNLTD ATFPRGVVNQ FRNFIVRGYP QTVILAAGSA QPRTIAYTWH PSMNVVLTRT
EASVLGAGNK ETIFDYDDPA AAGDDPAVYN ESPTKLLYRK IEKGYRKTVA GTVASYEYVT
ALTYNAGGQV LTIDGPRSGT GDTTTFAYDA TTNDLLSVTR PLVGATVFSN FDAAGNPRKL
TDVNAQEQTF VYDSRGRIKE IHNTADSSVR TVTYNVAGLP ATRTDEDGVN ESHTYDNTYG
QPRRVTDHEG NYVKTIFNAA GNLTSVQHLT AADEITRERT WSYSGSDYPG LLFKEYEADG
VTHTRTQYDA SGNVRSVVDP NGNQTDYAYD AFNRVISITR PGNAVTHFEY DSQGNLAKVV
DPEGDPANPA LGHTTTTTYD DMGNLIGVGS PDSGTTTYGY RPEGTIWWRI DARNIQTTYS
NDALYRINQA SYPAVGDLAA YTVTYSHDQR ANGKGHLTTV TDPSGTTLLN YDARGRLKEK
KSTVSGFQFT LSRTFSPAGR VNQLTYPSGR TVTYSRAGCG CKLTGVSTTY GAESATTILE
NLSYQPFGQA TGMGWGNAGS VVSEYDLNGR LTTANRGAPM QRDFTYYPNG QLHTVAGTAS
TPWVNRVYAY DTLDRLSLAE RPQLTKAYDF DSAGNRLHTI VDASVSETYA YAAGTNRLSA
VAAAQGKTFD YDANGNTILI ASGTNRVFTY NQENRLIGVA EDGNPLGTYV YNGFGQRAAK
TAGGVATLYI YDFSGNLVCE AEGTGGGIQK EYIHHGRSRL AMADPGAGAV CSGNTKVCVY
FTHNDLLGTP EFMTDSTNTA VWEAAYDAFG EATIHPASTV VNNFRFPGQY YDAETGLHYN
WHRYYDPKTG RYMTPDPIGL AGGINPYTYA ENDPINFIDL YGLWRFPDYV SINFNIAIPT
PWTATLLGGT AQVALDRYGN FYAGPGGTVG KAATVFSLSA TVGWLDTSEK PCEKTLDNFL
SGHSFNAGAG FWGGGGETWT PGVGTGTEVG FVSPQAGASY HYSWKVTKFG FGW
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